BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14390.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488279 jgi|Araly1|488279|fgenesh2_kg.6__1413__AT5G14390.1 2326 0.0
Ahg477346 jgi|Araly1|477346|fgenesh2_kg.3__47__AT3G01690.1 761 0.0
> Ahg488279 jgi|Araly1|488279|fgenesh2_kg.6__1413__AT5G14390.1
Length=1492
Score = 2326 bits (1259), Expect = 0.0
Identities = 1426/1504 (95%), Gaps = 22/1504 (1%)
Strand=Plus/Plus
Query 1 GTTCATTCTCTTGCTTTACCATTTCAAAGTGCCACTTTTTCTTCCTAAATCctctctctc 60
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GTTCATTCTCTTCCTTTACCATTTC-AAGTGCCACTTTTTCTTCCTAAATCCTCTCTCTC 59
Query 61 --tct----ctcCGTTCCCGAG-ACAAGCAAAAGCTTCAATCTCAAATCTTTCAGCAGCT 113
||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 60 TATCTCGCGCTCCGTTCCCGAGAAAAAGAAAAAGCTTCAATCTCAAATCTTTCAGCAGCT 119
Query 114 ACAAAAATGTTCTTCATCT-AAAAGAGACTGTGAAGCagagagagagagagagagagaga 172
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 120 ACAAAAATGTTCTTCATCTGAAGAGAGACTGTGAAGCAGAGAGAGAGAGAGAGAGAGAGA 179
Query 173 gagagagagaTGGGAGGTGTGACGTCATCAGTTGCGGCGAAGTTCGCTTTCTTCCCGCCG 232
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 180 GAGAGAGAGATGGGAGGTGTGACGTCATCAGTGGCGGCGAAGTTTGCTTTCTTCCCGCCG 239
Query 233 AGTCCGTCGTCTTACAAGCTGGTTTACGATGAACTGACCGGACTTCTTCTGATGAACCCA 292
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 240 AGTCCGTCGTCTTACAAGCTGGTCTACGACGAACTGACCGGACTTCTTCTGATGAACCCA 299
Query 293 TTTCCTCACCGTGAAAACGTTGAAATCCTTAAGCTTCCGACACGTAGAGGAACAGAGATC 352
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 300 TTTCCTCACCGTGAAAACGTCGAGATCCTTAAGCTTCGGACACGTAGAGGAACAGAGATC 359
Query 353 GTGGCTATGTACGTCAGACATCCGATGGCTACCTCTACTCTGCTTTATTCCCATGGAAAC 412
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGACTATGTACGTCAGACATCCGATGGCTACCTCTACTCTGCTTTATTCCCATGGAAAC 419
Query 413 GCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAATTGAGCATCCATCTTAAGGTT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAATTGAGCATCCATCTTAAGGTT 479
Query 473 AATCTCATGGGGTACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCAAGTGAGCAC 532
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 480 AATCTCATGGGGTATGATTACTCAGGGTATGGACAATCAACTGGAAAGCCAAGTGAGCAC 539
Query 533 CATACATATGCTGATATCGAAGCTGCTTATAAATGTCTTGAGGAAACCTATGGAGCAAAA 592
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 CATACATATGCTGATATCGAAGCTGCTTATAAATGTCTTGAGGAAACCTACGGAGCAAAG 599
Query 593 CAGGAAGACATAATCCTTTATGGCCAATCCGTTGGAAGTGGACCTACATTAGATCTTGCT 652
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAGGAAGACGTAATCCTTTATGGCCAATCCGTTGGAAGTGGACCTACATTAGATCTTGCT 659
Query 653 GCTCGGTTGCCTCAATTAAGAGCTGCTGTTCTCCATAGCCCGATTCTTTCTGGTCTAAGA 712
||||| |||||||| |||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 660 GCTCGATTGCCTCATTTAAGAGCTGTTGTTCTCCATAGCCCGATTCTTTCGGGTTTAAGG 719
Query 713 GTAATGTATCCAGTGAAGAAGACATACTGGTTCGACATCTTCAAGAATATCGACAAAATA 772
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTAATGTATCCAGTGAAAAAGACATACTGGTTCGACATCTTCAAGAATATCGACAAAATC 779
Query 773 CCTCTTGTGAATTGCCCGGTTCTCGTCATTCACGGAACTTGTGATGAAGTTGTTGACTGT 832
|| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CCACTAGTTAATTGCCCGGTTCTCGTCATTCACGGAACTTGTGATGAAGTAGTTGACTGC 839
Query 833 TCTCATGGAAAACAACTATGGGAACTCTCTAAAGAGAAATATGAACCGCTTTGGCTCGAA 892
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCCCATGGAAAACAACTGTGGGAACTCTCTAAAGAGAAATATGAACCGCTTTGGCTCGAA 899
Query 893 GGCGGTAACCACTGTGATCTAGAACACTATCCTGAATACATTAAACACCTTAAGAAGTTC 952
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGTGGTAACCACTGTGATCTAGAACACTATCCTGAATACATTAAACACCTTAAGAAGTTC 959
Query 953 ATCACAACCGTAGAGAGAGATCTCTCCTCGAGGGCGAGCACGGCCCAATTAGAGAAACAG 1012
|||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 960 ATCACAACCGTAGAGAGATCTCTCTCCTCAAGGGCGAGCACGGCCCAATCAGAAAAACAG 1019
Query 1013 AGCAGCGATTTGGAAATGCCGAGGCAGAGCGTAGATAGAAGAGAGAAGCCGAGGCAAAGC 1072
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGCAGTGATTTGGAAATGCCGAGGCAGAGCGTAGATAGAAGAGAGAAGCCGAGGCAAAGC 1079
Query 1073 GTTGATAAAAGGGAGAAAGAGAAACCTCCAAAGGGTCCTTCAAAGAAGAGTAAGCTGAGA 1132
||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1080 GTTGATAGAAGGGAGAAAGAGAAACCTCCAAAGGGTCCGTCGAAGAAGAGTAAGCTGAGA 1139
Query 1133 ATCACGTTCGAGCAGCACTTAGATCGGACTAGGAGAAGCGTTGACTTCCACGAAAAGGCA 1192
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1140 ATCACATTCGAGCAGCACTTAGATCGGACTAGGAGGAGCGTTGACTTCCACGAAAAGGCA 1199
Query 1193 AGGAAGAGCGTTGACcatcatcagcatcatcagaatcatcatcaGATTGAGAGAGGAAGG 1252
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGGAAGAGCGTTGACCACCATCAACATCATCAGAATCATCATCAGATTGAGAGAGGAAGG 1259
Query 1253 AAGAGTGTTGATAGATTGGATAGAGTACGGTCTGAGTAAA-CCGGAGAAAATCTACCACA 1311
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1260 AAGAGTGTTGATAGATTGGATAGAGTACGGTCTGAGTAAAACCGGAGAAAC-CTACCACA 1318
Query 1312 CGTACATAAGTTGTTACAGAACAAGAACATTTGATCTTGATCTTGATTGGCCATTCTAAT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1319 CGTACATAAGTTGTTACAGAACAAGAACATTTGATCTTGATCTTGATTGGCGATTCTAAT 1378
Query 1372 GTTTATGGTTTTTTGTTTT-GATTTGTGAGTTATTCTCTAGTTTTATTTGGGTGTGTCAT 1430
||||||| | ||||||||| |||| |||||||||||| |||||| ||||||||||| ||
Sbjct 1379 GTTTATG-TGTTTTGTTTTTGATT-GTGAGTTATTCTGTAGTTT-ATTTGGGTGTG--AT 1433
Query 1431 TTCTTGAATGGTGAAGCTTAAATCTTAAGCAAACAAATGAGAGAAATTAGGTCTTTACAA 1490
|| || | |||||||| ||||||||||| |||| |||||||| ||||||||||||||
Sbjct 1434 TT-TTC--T--TGAAGCTTCAATCTTAAGCAGACAATTGAGAGAATTTAGGTCTTTACAA 1488
Query 1491 TAAC 1494
||||
Sbjct 1489 TAAC 1492
> Ahg477346 jgi|Araly1|477346|fgenesh2_kg.3__47__AT3G01690.1
Length=1309
Score = 761 bits (412), Expect = 0.0
Identities = 684/813 (84%), Gaps = 28/813 (3%)
Strand=Plus/Plus
Query 171 gagagagagagaTGGGAGGTGTGACGTCATCAGTTGCGGCGAAGTTCGCTTTCTTCCCGC 230
|||| || ||||||||||| ||||||||||| || ||||| |||||||| ||||||||||
Sbjct 163 GAGA-AG-GAGATGGGAGGGGTGACGTCATCGGTGGCGGCTAAGTTCGCCTTCTTCCCGC 220
Query 231 CGAGTCCGTCGTCTTACAAGCTGGTTTA-CGATGAACTGACCGGACTTCTT-CTGATGAA 288
|||||||| ||||||||||| ||| | | ||| || || ||||||| | || || | |
Sbjct 221 CGAGTCCGCCGTCTTACAAGGTGG-TGACCGACGAGCTCACCGGAC-TGTTGCTTCTCAG 278
Query 289 CCCATTT-CCTCACCGTGAAAACGTTGAAATCCTTAAGCTTCCGAC-ACGTAGAGGAACA 346
||| ||| || ||||| |||||||| |||||| | ||||||||||| | | ||||| ||
Sbjct 279 CCC-TTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCCGACGA-GGAGAGGCACT 336
Query 347 GAGATCGT-GGCTATGTACGTCAGACATCCGATGGCTACCTCTACTCTGCTTTATTCCCA 405
|||||||| ||| |||||||| || ||||| ||||||||||| || || || || |||||
Sbjct 337 GAGATCGTGGGC-ATGTACGTGAGGCATCCCATGGCTACCTCCACGCTCCTCTACTCCCA 395
Query 406 TGGAAACGCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGA-ATTGAGCATCCATC 464
||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 396 TGGCAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATCGAGCTT-AGCATCCATC 454
Query 465 TTAAGGTTAATCTCATGGGGTACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCAA 524
| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 455 TCAAGGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCTA 514
Query 525 GTGAGCACCATACATATGCTGATATCGAAGCTGCTTATAAATGTCTTGAGGAAACCTATG 584
||||||| | || ||||||||||||||||||| |||||| |||||||| ||||| | ||
Sbjct 515 GTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACATTTG 574
Query 585 GAGCAAAACAGGAAGACATAATCCTTTATGGCCAATCCGTTGGAAGTGGACCTACATTAG 644
| | || |||||||| | || || || |||||||| || || || |||||||| ||||
Sbjct 575 GCTCTAAGCAGGAAGATGTCATTCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTTAG 634
Query 645 ATCTTGCTGCTCGGTTGCCTCAA-TTAAGAGCTG-CTGTTCTCCATAGCCCGATTCTTTC 702
|||||||| | |||||||||||| ||| |||| | | || || || ||||| ||||| ||
Sbjct 635 ATCTTGCTTCCCGGTTGCCTCAACTTA-GAGCCGTC-GTCCTTCACAGCCCCATTCTCTC 692
Query 703 TGGTCTAAGAGTAATGTAT-CCAGTGAAGAAGACATACTGGTTCGACATCTTCAAGAATA 761
|||| ||||||| |||||| || || ||||| || |||||||||||||||| ||||||||
Sbjct 693 TGGTTTAAGAGTTATGTATGCC-GTCAAGAAAACCTACTGGTTCGACATCTACAAGAATA 751
Query 762 TCGACAAAATACCTCTTGT-GAATTGCCCGGTTCTCGTCATTCACGGAACTT-GTGATGA 819
|||||||||| || | ||| || ||||||||||||| ||||||| ||||||| | |||||
Sbjct 752 TCGACAAAATCCCGCATGTCGA-TTGCCCGGTTCTCATCATTCATGGAACTTCG-GATGA 809
Query 820 AGTTGTTGACTGTTCTCATGGAAAACAACTATGGGAACTCT-CTAAAGAGAAATATGAAC 878
||| || || ||||||||||| ||||||||||||||||||| | ||||| || || || |
Sbjct 810 AGTAGTGGATTGTTCTCATGGGAAACAACTATGGGAACTCTGC-AAAGACAAGTACGAGC 868
Query 879 CGCTTTGGCTCGAA-GGCGGTAACCACTGTGATCTAGAACACTATCCTGAATACATTAAA 937
|||| ||| | ||| || || |||||||||||||| |||||||| ||||||||||| | |
Sbjct 869 CGCTCTGGGT-GAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATCAGA 927
Query 938 CACCTTAAGAAGTTCATCACAACCGTAGAGAGA 970
||||||||||| |||||||| || |||||||||
Sbjct 928 CACCTTAAGAAATTCATCACGACAGTAGAGAGA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5