BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14400.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893345 jgi|Araly1|893345|Al_scaffold_0006_1341 1271 0.0
Ahg940915 jgi|Araly1|940915|scaffold_601459.1 159 3e-38
> Ahg893345 jgi|Araly1|893345|Al_scaffold_0006_1341
Length=1146
Score = 1271 bits (688), Expect = 0.0
Identities = 744/772 (96%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 160 ATGTTCATACTTCAAAACGAAGGGAAGTTGTTTACATCGGATTATCCAAAAGCGATGCAT 219
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1 ATGTTCATACTTCAAAACGAAGGGAAGTTATTTACTTCGGATTATCCGAAAGCGATGCAT 60
Query 220 GACATTCTCGGCAAATATTCCCTTCTATTAGCCACCGGAGAAATTCACAGGAAACTAAAA 279
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GACATTCTCGGCAAATATTCCCTCCTATTAGCCACCGGAGAAATTCACAGGAAACTAAAA 120
Query 280 AATGTTATTATTAGCTTCATCAATCTCACAAAGTCGAAACCTGACTTTCTTCACTGCGCA 339
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AACGTTATTATTAGCTTCATCAATCTCACAAAGTCGAAACCCGACTTTCTTCACTGCGCA 180
Query 340 GAGAACCTCTCTATCTCGATACTAAAGTCATGGAAAAATTGCCGAGAAGTCGAATTCCAT 399
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGACCCTCTCTATCTCGATACTAAAGTCATGGAAAAATTGCCGAGAAGTCGAATTCCAT 240
Query 400 AAAGAAGTTAAAATATTTACTCTCAGTGTTATGGTAAACCAACTCTTGAGCATCAAGCCA 459
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGAAGTTAAAATGTATACTCTCAGTGTTATGGTAAACCAACTCTTGAGCATCAAGCCA 300
Query 460 GAAGACCCAGCAAGACTTTATGTATTGCAAGATTTTTTATCTTATATGAAAGGGTTTATC 519
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGACCCAGCAAGACTTTATGTGTTGCAAGATTTTTTATCTTATATGAAAGGGTTTATC 360
Query 520 TCCTTACCAATACCGCTTCCAGGAACGGGTTATACAAACGCAATTAAGGCTAGGAAGAGA 579
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTTACCTATACCGCTTCCAGGAACGGGTTATACAAACGCAATTAAGGCTAGGAAGAGA 420
Query 580 TTGTCGGCGAGGGTTATGGGGATGATAAaagaaagagagcgcgaagaagaagacatgaat 639
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 421 TTGTCGGCGAGGGTTATGGGCATGATAAAACAAAGAGAGCGTGAAGAAGAAGACATGAAG 480
Query 640 aatgcaataagagaagaagaTTTTCTGGATTCGATAATTTCGAATGAAGATCTAAATTAT 699
||||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 481 AATGCCATAAGAGAAGAAGATTTTCTAGATGCGATAATATCAAATGAAGATCTAAATTAT 540
Query 700 GAAGAGAAAGTTAGCATTGTGTTGGACATTTTGCTTGGAGGCTTTGAGACAAGTGCTACT 759
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GAAGAGAAAGTTAGCATTGTGTTGGACATTTTGCTTGGAGGCTTTGAAACAAGTGCTACT 600
Query 760 ACTCTTTCCTTAGTCGTCTATTTTCTAGCAAAATCTCCAAATCTTCTTCACAAACTCAAG 819
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TCTCTTTCCTTAGTCGTCTATTTTCTAGCAAAATCACCAAATCTTCTTCACAAACTCAAG 660
Query 820 GAAGAACATGCAGCCATTAGAGCCAAGAAAGGGGATGGGGAACTTTTGAATTGGGAAGAT 879
|||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 661 GAAGAACATGAAGCCATTAGAGCCAAGAAAGGAGATGGGGATCTTTTGAATTGGGAAGAT 720
Query 880 TATCAGAAGATGGAATTCACTCAATGTGTGATTTCTGAGGCACTACGATGTG 931
|||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 TATCAGAAAATGGAATTCACTCAATGTGTGATGTCTGAGGCACTACGATGTG 772
Score = 545 bits (295), Expect = 2e-154
Identities = 309/316 (98%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 931 GAATATGTGATTCCAAAGGGGTGGAAGGTGTTTCCAATCTTCACAGCAGTACATCTTGAT 990
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 826 GAATATGTGATTCCAAAGGGATGGAAGGTGTTTCCAATCTTCACAGCAGTACATCTTGAT 885
Query 991 CCCTCTCTTCATGAAAATCCTTTTGAATTTAATCCCATGAGATGGACCGATAAGGCTAAG 1050
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CCATCTCTTCATGAAAATCCTTTTGAATTTAATCCCATGAGATGGACCGATAAGGCTAAG 945
Query 1051 ATGAACAAGAAAACGACGGCGTTTGGAGGAGGAGTAAGGGTATGTCCTGGTGGTGAACTT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATGAACAAGAAAACGACGGCGTTTGGAGGAGGAGTAAGGGTATGTCCTGGTGGTGAACTT 1005
Query 1111 GGCAAGCTCCAAATTGCTTTCTTCCTTCATCATCTTGTCCTCTCCTATAGGTGGAAAATA 1170
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1006 GGCAAACTCCAAATTGCTTTCTTCCTTCATCATCTTGTCCTCTCTTATAGGTGGAAAATA 1065
Query 1171 AAGTCAGATGAAATGCCAATCGCGCACCCTTACGTGGAGTTTAAGAGAGGCATGCTTTTG 1230
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1066 AAGTCAGATGAAATGCCAATAGCACATCCTTACGTGGAGTTTAAGAGAGGCATGCTTTTG 1125
Query 1231 GAGATAGAGCCAACAA 1246
||||||||||||||||
Sbjct 1126 GAGATAGAGCCAACAA 1141
> Ahg940915 jgi|Araly1|940915|scaffold_601459.1
Length=258
Score = 159 bits (86), Expect = 3e-38
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1 GGATGGCCTTTCATTGGAGAAACTATTTCTTTCTTCAAACCTCATAGATCAGACTCCATC 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 GGATGGCCTTTCGTTGGAGAAACTATTTCTTTCTTCAAACCTCATAGATCAGACTCCATC 204
Query 61 GGTACATTCTTGCAACAACGTGTTTCACGGTA 92
|| |||||||||||||||||||||||||||||
Sbjct 205 GGCACATTCTTGCAACAACGTGTTTCACGGTA 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5