BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14420.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488284 jgi|Araly1|488284|fgenesh2_kg.6__1418__AT5G14420.2 2525 0.0
Ahg927592 jgi|Araly1|927592|scaffold_300049.1 806 0.0
> Ahg488284 jgi|Araly1|488284|fgenesh2_kg.6__1418__AT5G14420.2
Length=1821
Score = 2525 bits (1367), Expect = 0.0
Identities = 1528/1601 (95%), Gaps = 29/1601 (2%)
Strand=Plus/Plus
Query 70 AGGGTACGGAACTGACCTGAGAGGTTTGATTTGAATCTAAAAAGGTTTAGTTTTTTGTTA 129
||||||| ||| |||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 161 AGGGTACTGAATTGACTTAAGAGGTTTGATTTGAATCTAGAAAGGTTTAGTTTTTTGTTA 220
Query 130 AGTTTGATGGGGACAGGGAATTCTAAAGAAAACTGGAGACAGTCATCGTTTAGGTCAACT 189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 221 AGTTTGATGGGGACAGGGAATTCTAAAGAGAACTGGAGACAGTCATCGTTTAGGTCAGCT 280
Query 190 TCTGCTTCATCAGCATCACCATCTTCATCTTCATGGGCTTCTCAACAAAGTTATCCTCAG 249
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TCAGCTTCATCAGCATCACCATCTTCATCTTCATGGGCTTCTCAACAAAGTTATCCTCAG 340
Query 250 TATGGTGCAGAAAGCTATAATTACCCTCCTCCACCTTCTTATGC-CCAACCTCCTGAGTA 308
||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 341 TATGGTGCAGAAAGCTACAATTATCCTCCTCCACCTTCATATGCTCC-ACCTCCTGAGTA 399
Query 309 TACGC-AAC-C-TCCTCCTCCTTTATATAGTACTCAGCCTTACTCTGCTCCGTCTTATTC 365
||||| ||| | |||||||| | || || | || ||||| | | |||||||
Sbjct 400 TACGCAAACGCAACCTCCTCC-ACCTTTA-TA-T-AG---TACTCAG---C--CTTATTC 447
Query 366 TGCACCGCCTTCTCAAAGTTATGGTAGTGATAATAAGAAGAGGTTGGAGCGCAAGTATTC 425
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TGCACCGCCTTCTCAAAGCTATGGTAGTGATAATAAGAAGAGGTTGGAGCGCAAGTATTC 507
Query 426 GAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCTTGCACGGGCGGG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 508 GAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCTTGCACGGGCAGG 567
Query 486 TCTAGAATCTTCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAATGGACAGG 545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TCTAGAATCATCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAATGGACAGG 627
Query 546 GGCCAGGTCCTTCAATAGGAAAAGCTTACACTTCATAGGCAGTAGTCCCAATCCTTATGA 605
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 628 GGCCAGGTCCTTCAATAGGAAAAGCTTACATTTCATAGGCAGTAGTCCCAATCCTTACGA 687
Query 606 ACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGACAACTTGATTCC 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 ACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGACAACTTGATTCC 747
Query 666 ATGTTATGGTTTTGGAGATGCATCAACACATGATCAAGACGTGTTCAGTTTCAATTCAGA 725
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 748 ATGTTATGGTTTTGGAGATGCATCAACACATGACCAAGACGTGTTCAGTTTCAATTCGGA 807
Query 726 GGATAGATTCTGTAATGGATTTGAGGAAGTACTTTCCCGGTATAAGGAGATCGTGCCTCA 785
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 808 GGATAGATTCTGTAATGGATTTGAGGAAGTACTTGCTCGGTATAAAGAGATCGTGCCTCA 867
Query 786 ACTTAAGCTTGCAGGGCCAACCTCCTTTGCTCCGATCATCGATATGGCCATGACCATTGT 845
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 868 ACTTAAGCTCGCAGGGCCAACCTCGTTTGCTCCGATCATCGATATGGCCATGACCATTGT 927
Query 846 TGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGATGGGCAGGTTACAAG 905
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 928 TGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGATGGACAGGTTACAAG 987
Query 906 AAGTGTTGACACGGAAAATGGACAGTTAAGTCCACAAGAACAGAAGACGGTAGATGCGAT 965
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 988 AAGTGTTGACACGGAAAATGGACAGTTAAGTCCGCAGGAACAGAAGACAGTAGATGCGAT 1047
Query 966 CGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTGGGGGATGGACCTTG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTGGGGGATGGACCTTG 1107
Query 1026 GGACATGATGAGGGAATTTGACGATAATATTCCGGCCAGAGCGTTTGATAACTTCCAATT 1085
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1108 GGACATGATGAGGGAATTTGACGATAATATCCCGGCCCGAGCATTTGATAACTTCCAATT 1167
Query 1086 CGTGAACTTCACAGAGATCATGGCAAAGAACAAAGCTCAATCCTTGAAGGAAACAGAGTT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CGTGAACTTCACAGAGATCATGGCAAAGAACAAAGCTCAATCCTTGAAGGAAACAGAGTT 1227
Query 1146 TGCCCTTTCTGCTCTCATGGAGATTCCTCAACAATACAAGGCGACAATAGAGCTTAACCT 1205
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1228 TGCCCTTTCTGCTCTCATGGAGATTCCTCAACAGTACAAGGCGACAATAGAGCTTAACCT 1287
Query 1206 TTTAGGAAGAAGAAATGG-ATATATCCCGGAGAGATTCCCTCTTCCGCCTCCAATGCGCG 1264
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1288 TTTAGGAAGAAGAAATGGGA-ATATCCCGGAGAGATTCCCTCTTCCGCCTCCAATGCACG 1346
Query 1265 GTGGATCATCGTCCTACAACAGTCCAAAGCCTT-CACGTCTTCCAAGTTTCAAACCGAGT 1323
||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||
Sbjct 1347 GTGGATCATCGTCCTACAAGAGTCCAAAGCCTTTC-CGTCCTCCAAGTTTCAAACCGAGT 1405
Query 1324 GTTCCTCCTCATCCAACTGAAG---GCTATCACGTAAGGTCTAGTCCCGTCCCACCCCCT 1380
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1406 GTTCCTCCTCATCCAACTGAAGAAAGCTATCACGTAAGGTCTAGTCACGTCCCACCCCCT 1465
Query 1381 ACAAGCTCTGCTTCTGATAACCAGCTATGTCCGATTTGTTTGAGCAACCCGAAAGACATG 1440
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 ACAAACTCTGCTTCTGATAACCAGCTATGTCCGATTTGTTTGAGCAACCCGAAAGACATG 1525
Query 1441 GCCTTTGGTTGTGGCCATCAGACTTGTTGCGAGTGTGGACCAGATCTTCAAATGTGTCCG 1500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1526 GCCTTTGGTTGTGGCCATCAGACTTGTTGCGAGTGTGGACCAGGTCTTCAAATGTGTCCG 1585
Query 1501 ATTTGCCGTGCACCAATCCAGACAAGAATAAAGCTCTACTAACAAACAAGTAGACCAGAC 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 ATTTGCCGTGCACCAATCCAGACAAGAATAAAGCTCTACTAACAAACAAGTAGACCAGA- 1644
Query 1561 ATCGACGACCCTTCTCTCTCT-TTCATCTTCTTTCAACTTCTTTTGGGAATTTAGTTTGA 1619
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1645 -TCGACGACCCTTCTCTCT-TGTTCATCTTCTTACAACTTCTTTTGGGAATTTAGTTTGA 1702
Query 1620 ATCTAATCACTGAAATTTCTCCGAGAAAGATCGGATCTTTT 1660
||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 -TCTAATCACTGAAATTTCTCCGAGAAAGATCGGATCTTTT 1742
> Ahg927592 jgi|Araly1|927592|scaffold_300049.1
Length=1335
Score = 806 bits (436), Expect = 0.0
Identities = 755/907 (83%), Gaps = 29/907 (3%)
Strand=Plus/Plus
Query 360 TTATTCTGCACCGCCTTCTCAAAGTTATGGTAGTGATAATAAGAAGAGGTTGGAGCGCAA 419
|||| || |||||||||| || ||| || | | || | | ||||| || || || |
Sbjct 171 TTATCCTCCACCGCCTTCACAGAGTCAT-G-A-TGCTGACCGGAAGAAATTTGATCGGAG 227
Query 420 GTATTCGAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCT-TGCAC 478
|||||||||||| || ||| | ||||||||||| ||||||| |||||||||| || |
Sbjct 228 GTATTCGAAAATATCGGATAACTACTCTTCTTTACTGCAGGTGTCGGAGGCTCTAGGC-C 286
Query 479 GGGCGGGTCTAGAATCTTCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAAT 538
| || ||||| |||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 287 GTGCAGGTCTTGAATCTTCAAATCTAATCGTTGGTATTGATTTCACCAAGAGCAATGAAT 346
Query 539 GGACAGGGGCCAGGTCCTTCAATAGGAAAAGCTT--A-CACTTCATAGGCAGTAGTCCC- 594
|||||||||||| ||||||||||||||||||||| | ||||| | | ||| || |||
Sbjct 347 GGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTGCATCACTT-A-A-GCAATA-CCCCG 402
Query 595 AATCCTTATGAACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGAC 654
||||| || ||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 403 AATCCATACGAACAGGCAATAACTATCATAGGAAGAACCTTAGCCACCTTTGACGAGGAT 462
Query 655 AACTTGATTCCATGTTATGGTTTTGGAGATGCATCAACACATGATCAAGACGTGTTCAGT 714
||||| ||||| ||||||||||||||||| ||| |||| ||||||||||| ||||| |||
Sbjct 463 AACTTAATTCCTTGTTATGGTTTTGGAGACGCAACAACTCATGATCAAGATGTGTTTAGT 522
Query 715 TTCAATTCAGAGGATAGATTCTGTAATGGATTTGAGGAAGTACTTTCC-CGGTATA-AGG 772
||| || |||||| |||||||||||||||||||||||||||| || | || |||| ||
Sbjct 523 TTCTATCCAGAGGGTAGATTCTGTAATGGATTTGAGGAAGTA-TTGGCTCGTTATAGAGA 581
Query 773 AGATCGTGCCTCAACTTAAGCTTGCAGGGCCAACCTCCTTTGCTCCGATCATCGATATGG 832
| || || ||||| |||||||| ||||| ||||| || ||||| |||||||| || ||||
Sbjct 582 A-ATTGTACCTCAGCTTAAGCTCGCAGGACCAACATCTTTTGCCCCGATCATTGAAATGG 640
Query 833 CCATGACCATTG-TTGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGAT 891
| ||||| | || ||||||||||| |||| |||||||| || ||||||| ||||| |||
Sbjct 641 CAATGAC-AGTGGTTGAGCAGAGTAGTGGCCAATATCATGTGTTAGTGATTATAGCTGAT 699
Query 892 GGGCAGGTTACAAGAAGTGTTGACACGGAAAATGGACAGTTAAGTCCACAAGAACAGAAG 951
|| ||||| ||||||||||| || || ||| |||| | | ||||||| ||||||||||||
Sbjct 700 GGCCAGGTCACAAGAAGTGTCGATACCGAACATGGGCGGCTAAGTCCGCAAGAACAGAAG 759
Query 952 ACGGTAGATGCGATCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTG 1011
||||| ||||| || ||| |||| |||| |||||| | ||||| ||||||||||||||
Sbjct 760 ACGGTCGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCAATAGTCTTAGTCGGGGTC 819
Query 1012 GGGGATGGACCTTGGGACATGATG-AGGGAATTTGACGATAATATTCCGGCCAGAGCGTT 1070
||||||||||| |||||||||||| ||| ||||||| ||||| || || ||| |||| ||
Sbjct 820 GGGGATGGACCATGGGACATGATGCAGG-AATTTGATGATAACATACCTGCCCGAGC-TT 877
Query 1071 T-GATAACTTCCAATTCGTGAACTTCACAGAGATCATGGCAAAGAACAAAG-CTCAATCC 1128
| |||||||||||||| ||||||||||||||||||||| |||||||||||| | || ||
Sbjct 878 TCGATAACTTCCAATTTGTGAACTTCACAGAGATCATGTCAAAGAACAAAGAC-CAGTC- 935
Query 1129 TTG-AAGGAAACAGAGTTTGCCCTTTCTGCTCTCATGGAGATTCCTCAACAATACAAGGC 1187
| | ||||| ||||| || || || |||||||| ||||||||||||| ||| ||||| ||
Sbjct 936 TCGGAAGGAGACAGAATTCGCGCTCTCTGCTCTAATGGAGATTCCTCCACAGTACAAAGC 995
Query 1188 GACAATAGAGCTTAACCTTTTAGGAAGAAGAAATGG-ATATATCCCGGAGAGATTCCCTC 1246
|| |||||||||||||||||||| |||||||||| | |||||| |||||| |||| |
Sbjct 996 AACGATAGAGCTTAACCTTTTAGGGGGAAGAAATGGGAG-TATCCCAGAGAGAATCCCAC 1054
Query 1247 TTCCGCC 1253
|| ||||
Sbjct 1055 TTGCGCC 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5