BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14430.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940921 jgi|Araly1|940921|scaffold_601465.1 2542 0.0
Ahg470420 jgi|Araly1|470420|fgenesh2_kg.1__374__AT1G04430.1 270 3e-71
> Ahg940921 jgi|Araly1|940921|scaffold_601465.1
Length=1823
Score = 2542 bits (1376), Expect = 0.0
Identities = 1468/1514 (97%), Gaps = 0/1514 (0%)
Strand=Plus/Plus
Query 458 CATCATTGTCCTCCATCAGAACGGCGTTTCAATTGCCTTGTTCCGCCTCCTGTTGGTTAT 517
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 310 CATCATTGTCCTCCACCAGAACGGCGTTTCAATTGCCTTGTTCCGCCTCCAATTGGTTAT 369
Query 518 AAGATCCCGTTAAGGTGGCCTGTGAGTAGAGACGAGGTGTGGAAGGCGAATATCCCGCAC 577
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AAGATTCCGTTAAGGTGGCCTGTGAGTAGAGACGAGGTGTGGAAGGCGAATATCCCGCAC 429
Query 578 ACACACCTTGCTCAAGAGAAGTCTGATCAGAATTGGATGGTTGTTAATGGTGATAAGATC 637
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 430 ACACACCTTGCTCAAGAGAAATCTGATCAGAATTGGATGGTTGTAAATGGTGATAAGATC 489
Query 638 AATTTTCCTGGTGGAGGAACACATTTCCACAACGGAGCTGACAAATACATTGTTTCCCTG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 490 AATTTTCCTGGTGGAGGAACACATTTCCACAACGGAGCTGACAAATACATTGTGTCCCTT 549
Query 698 GCTCAGATGCTGAAATTCCCTGGTGACAAACTCAACAATGGGGGAAGCATTCGGAATGTT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 550 GCTCAGATGCTGAAATTCCCTGGTGACAAACTCAACAATGGGGGAAGCATTCGGAGTGTT 609
Query 758 CTTGACGTTGGTTGTGGGGTAGCTAGCTTCGGAGCCTATCTTCTTTCACATGACATCATA 817
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 610 CTTGATGTTGGTTGCGGGGTAGCTAGCTTCGGGGCCTATCTTCTTTCACATGACATCATA 669
Query 818 GCCATGTCTCTTGCCCCTAATGATGTCCACCAGAACCAGATCCAGTTTGCTCTAGAACGA 877
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCCATGTCTCTTGCTCCTAATGATGTCCACCAGAACCAGATCCAGTTTGCTCTAGAACGA 729
Query 878 GGGATTCCATCAACACTTGGTGTTCTTGGGACAAAGCGGCTTCCATACCCAAGCAGATCA 937
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 730 GGGATTCCATCGACGCTTGGTGTTCTTGGGACTAAGCGGCTTCCATACCCAAGCAGATCA 789
Query 938 TTTGAACTTGCTCACTGCTCTAGATGTCGGATAGATTGGCTTCAAAGAGATGGGATCTTG 997
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 790 TTTGAACTTGCTCACTGCTCTAGATGTAGGATAGATTGGCTTCAAAGAGATGGGATCTTG 849
Query 998 TTACTGGAACTTGATAGGTTGCTCAGACCTGGTGGCTACTTTGTATACTCGTCGCCTGAA 1057
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 850 TTGCTGGAACTTGATAGGTTGCTCAGACCTGGTGGCTACTTTGTCTACTCGTCGCCTGAA 909
Query 1058 GCTTATGCACACGACCCAGAGAACAGAAAGATTGGGAATGCAATGCATGATCTCTTTAAG 1117
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 910 GCTTATGCACACGACCCAGAAAACAGAAAGATTGGGAATGCGATGCATGATCTCTTTAAG 969
Query 1118 AGAATGTGTTGGAAGGTCGTGGCCAAACGAGACCAATCTGTTATATGGGGAAAACCGATA 1177
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 970 AGAATGTGTTGGAAGGTCGTGGCTAAACGAGACCAATCTGTTATATGGGGAAAACCAATA 1029
Query 1178 TCCAACAGCTGTTACTTGAAGAGGGATCCGGGTGTCCTGCCTCCGCTTTGTCCTTCTGGA 1237
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TCCAATAGCTGTTACTTGAAGAGGGATCCGGGTGTCCTGCCTCCGCTTTGTCCTTCTGGA 1089
Query 1238 GATGACCCAGATGCAACTTGGAATGTCTCAATGAAGGCTTGCATATCACCTTACTCAGTG 1297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1090 GATGACCCAGATGCAACTTGGAATGTCTCAATGAAGGCTTGCATATCTCCTTACTCAGTG 1149
Query 1298 AGGATGCACAAAGAAAGATGGAGTGGACTCGTTCCCTGGCCACGGAGGCTGACAGCTCCT 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AGGATGCACAAAGAAAGATGGAGTGGACTCGTTCCCTGGCCACGGAGGCTGACAGCTCCT 1209
Query 1358 CCACCACGTCTTGAAGAAATTGGTGTCACTCCTGAGCAATTCCGTGAAGATACGGAAACA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 CCACCACGTCTTGAAGAAATTGGTGTCACTCCTGAGCAATTCCGTGAAGATACGGAAACA 1269
Query 1418 TGGCGGCTTAGAGTGATAGAATACTGGAAACTGCTGAAACCAATGGTGCAAAAGAACTCC 1477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1270 TGGCGGCTTAGAGTGATAGAATACTGGAAACTGCTAAAACCAATGGTGCAAAAGAACTCC 1329
Query 1478 ATAAGAAACGTGATGGACATGAGCTCAAACCTTGGCGGTTTCGCAGCTGCTCTAAACGAT 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 ATAAGAAACGTGATGGACATGAGCTCAAACCTTGGCGGTTTCGCAGCTGCTCTAAACGAT 1389
Query 1538 AAAGATGTATGGGTAATGAATGTCATGCCCGTTCAATCCTCTCCAAGAATGAAGATCATT 1597
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1390 AAAGATGTATGGGTAATGAATGTTATGCCCGTTCAATCCTCTCCGAGAATGAAGATCATC 1449
Query 1598 TACGACCGTGGCCTTATCGGAGCCACTCATGATTGGTGTGAAGCCTTTGACACATACCCA 1657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1450 TACGACCGTGGCCTTATCGGAGCGACTCATGATTGGTGTGAAGCCTTTGACACATACCCA 1509
Query 1658 CGAACGTTTGATCTTATCCACGCATGGAACACCTTCACAGAAACCCAAGCACGTGGATGC 1717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1510 CGAACGTTTGATCTTATCCACGCATGGAACACGTTCACAGAAACCCAAGCACGTGGATGC 1569
Query 1718 AGCTTTGAAGATCTGCTTATCGAGATGGATCGGATACTACGCCCAGAAGGATTTGTCATA 1777
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1570 AGCTTTGAAGATCTGCTTATCGAGATGGATCGGATACTACGACCAGAAGGATTTGTCATA 1629
Query 1778 ATTCGTGACACAACTGACAATATTAGCTATATCAAGAAGTATCTGACATTATTGAAATGG 1837
|||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1630 ATTCGTGACACAACAGACAATATTAGCTACATCAAGAAGTATCTTACATTGTTGAAATGG 1689
Query 1838 GATAAATGGTCCACAGAGACAACTCCAAAAGGTGATCCTCTGTCGACCAAAGACGAGATA 1897
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 1690 GATAAATGGTCCACAGAGACAACTCCAAAAGGTGATTCTCTGTCGACCAAAGACGACAAA 1749
Query 1898 GTTTTGATCGCCAGAAAGAAACTTTGGAGCTTGCCCGCCATTTCAGTGTCCTGAAATCTA 1957
|||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||
Sbjct 1750 GTTTTGATCGCCAGAAAGAAACTTTGGAGCGTGCCCGCCAATTCAGCATCGTGAAATCTA 1809
Query 1958 ACAGTCAACAGGCG 1971
|||| ||||| |||
Sbjct 1810 ACAGGCAACATGCG 1823
Score = 418 bits (226), Expect = 9e-116
Identities = 261/278 (94%), Gaps = 2/278 (1%)
Strand=Plus/Plus
Query 92 CCGGATCCGGAGACGCTGAGAATGAAACACTTCAGAACTGAGCGAGTCCGTGCGACTCCG 151
|||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 CCGGATCCGGCGACGCTGAGTATGAAACACTTCAGAACTGAGCGAGTCCGTCCGACTCCG 60
Query 152 AAGCTCTTCACCTACGTTCTCGTCGGTTTCATCGCTCTACTCGGCTTGACTTGCCTCTAC 211
||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 61 AAGCTCTTCACTTACGTTCTCGTCGGTTTCATCGCTCTACTTGGCCTGACTTGCCTCTAC 120
Query 212 TACGGCTCTTCGTTCGCTCCCGGATCCAGAAAGTCCGATGAGTTCGATGGATCTAATAAC 271
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TACGGCTCTTCCTTCGCTCCCGGATCCAGAAAGTCCGATGAGTTTGATGGATCTAATCAC 180
Query 272 CGCGTTCGCACCGGAATCGGATCCTTGAGGAATCGAGATATTGTGCTTGCAGTGAGCCGT 331
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 181 CGCGTTCGCACCGGAATCGGATCCGCGAGGAATCGAGATAGTGTGCTTGCAGTGAGCCTT 240
Query 332 TTCGAAGTTCCTAAAAGTGTTCCGATAT-GTGATTCGA 368
|||||||||||||||||||||||| | | |||| ||||
Sbjct 241 TTCGAAGTTCCTAAAAGTGTTCCGGT-TCGTGAATCGA 277
> Ahg470420 jgi|Araly1|470420|fgenesh2_kg.1__374__AT1G04430.1
Length=2099
Score = 270 bits (146), Expect = 3e-71
Identities = 554/745 (74%), Gaps = 52/745 (7%)
Strand=Plus/Plus
Query 344 AAAAGTGTTCC-GATATGTGAT--TCGAGACACTCGGAGTTGATACCGTGTTTGGATCGG 400
|||||| |||| | | |||||| ||| | |||||||| | || || || || ||| ||
Sbjct 469 AAAAGTTTTCCTG-TTTGTGATGATCG-G-CACTCGGAAATCATCCCTTGCTTAGATAGG 525
Query 401 AACCTTCAT-TACCAGTTGAAATTGAAACTCAATTTATCGT-TAATGGAGCACTATGAGC 458
|| ||||| ||||| ||| ||||| || || |||| | ||||||| || ||||| |
Sbjct 526 AA-TTTCATCTACCAAATGAGGTTGAAGCTTGATCTATC-TCTAATGGAACATTATGAAC 583
Query 459 ATCATTGTCCTCCAT-CAGAACGGC-GTTTCAATTGCCTTG-TTCCGCCTCCTGT-TGGT 514
||||||||||| | | ||| | | |||| || || ||| |||| || || | |||
Sbjct 584 GGCATTGTCCTCC-TCCCGAAAGACGGTTT-AACTG-TTTGATTCCTCCACC-ATCTGGC 639
Query 515 TATAA-GATCCCGTTAAGGTGGCCTGTGAGTAGAGACGAGGTGTGGAAGGCGAATATCCC 573
|| || | ||| |||| ||||||| ||||||||| || |||||||| || || || ||
Sbjct 640 TACAAGGTTCCTATTAA-GTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCCAACATACC 698
Query 574 GCACACACACCTTGCTCAAGAGAAGTCTGATCAGAATTGGATGGTTGTTAATGGTGATAA 633
||||| ||||| || |||||||||||||||||||||||||||||| || || || ||
Sbjct 699 TCACACTCACCTCGCAAAAGAGAAGTCTGATCAGAATTGGATGGTTGAGAAAGGCGAGAA 758
Query 634 GATCAATTTTCCTGGTGGAGGAACACATTTCCACAACGGAGCTGACAAATACATTGTTTC 693
|| |||||| |||||||| || |||||||| |||||||||| |||||||||| ||
Sbjct 759 AATTTCTTTTCCAGGTGGAGGCACTCATTTCCATTACGGAGCTGATAAATACATTGCATC 818
Query 694 CCTGGCTCAGATGCTGAAATTCCCTGGT-GACAAACTCAACAATGG-GGGAAGCATTCGG 751
| || | ||||| || || | | || ||| || ||| |||| | ||| |
Sbjct 819 AATCGCAAATATGCTTAATTTTTC-GAACGATGTACTGAATGATGAAGGGA-G-ATTAAG 875
Query 752 AATG-TTCTTGACGTTGGTTGTGGGGTAGCTAGCTTCGGAGCCTATCTTCTTTCA-CATG 809
|| | ||||||| || || || || || || || || ||||| || ||||| || | ||
Sbjct 876 AACGGTTCTTGATGTCGGATGCGGAGTTGCGAGTTTTGGAGCTTACCTTCTCGCATC-TG 934
Query 810 ACAT-CAT-AGCCATGTCTCTT-GCCCCTAATGATGTCCACCAGAACCAGATCCAGTTTG 866
| || | | | | ||||| || |||||||||||||| ||||||||||| ||||||||||
Sbjct 935 ATATAC-TCA-CAATGTCA-TTAGCCCCTAATGATGTTCACCAGAACCAAATCCAGTTTG 991
Query 867 C-TCTAGAACGAGGGATTCCATCA-ACACTTGGTGTTCTTGGG-AC-AAAGCGGCTTCCA 922
| | ||||| |||| || || | | ||||||||| || || || ||| |||||||
Sbjct 992 CAT-TAGAAAGAGGAATCCCCGCTTAT-CTTGGTGTT-TTAGGTACCAAAA-GGCTTCCT 1047
Query 923 TACCCAAGCAGATCATTTGAACTTGCTCACTGCTCTAGATGTCGGATAGATTGGCTTCAA 982
||||| ||||||||||| || || ||||| || ||| ||||| |||| ||||||||||||
Sbjct 1048 TACCCGAGCAGATCATTCGAGCTAGCTCATTGTTCTCGATGTAGGATCGATTGGCTTCAA 1107
Query 983 AGAGATGGGA-TC-TTGTTACTGGAACTTGATAG-GTTGCTCAGACCTGGTGGCTACTTT 1039
||||| || | || || || || || || ||| | || || ||||| || || || |||
Sbjct 1108 AGAGACGG-ACTCCTTCTT-CTTGAGCTCGATCGCGTA-CTAAGACCGGGAGGTTA-TTT 1163
Query 1040 -G-TATACTCGTCGCCTGAAGCTTA 1062
| | || ||||| |||||||||||
Sbjct 1164 CGCT-TATTCGTCTCCTGAAGCTTA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5