BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14440.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488286 jgi|Araly1|488286|fgenesh2_kg.6__1420__AT5G14440.1 1480 0.0
> Ahg488286 jgi|Araly1|488286|fgenesh2_kg.6__1420__AT5G14440.1
Length=1020
Score = 1480 bits (801), Expect = 0.0
Identities = 954/1025 (93%), Gaps = 22/1025 (2%)
Strand=Plus/Plus
Query 3 TTGATCTCAATTACACTAAAACGGCAAGTCACAATCGTGT-AACTACTTGCAG-AC-CTC 59
|||||||||||||||||||||||||||||| || |||||| |||||||||||| | |||
Sbjct 1 TTGATCTCAATTACACTAAAACGGCAAGTCGCAGTCGTGTAAACTACTTGCAGTCCTCTC 60
Query 60 CTT-CAGTGAAACAACCCAAATTGCTAAGAAATAGAACCTCAATGGCGGCGACAGAGGAA 118
||| ||||||||| || ||||| |||||||||||| || |||||||||||||||||||||
Sbjct 61 CTTACAGTGAAAC-ACACAAATCGCTAAGAAATAGTACATCAATGGCGGCGACAGAGGAA 119
Query 119 GAGGTG---ACGACGACGAAGGAAGGCGCCGACCTATTGGGGAAGCCAAAGTATAAGAAA 175
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 GAGATGACAACGACGACGAAGGAAGGCGCTGACCTATTGGGGAAGCCAAAGTATAAGAAA 179
Query 176 CTCGAGAACGGGAGATTTAAATGCGTGCAGACGGGTCACGAGCTACTCGAGAAAGACAAG 235
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCGACAACGGGAGATTTAAATGTGTGCAGACGGGTCACGAGCTACTCGAGAAAGACAAG 239
Query 236 AAGGTCTATTCACAGAGTAAACGATGCCGTTTAGGGCTTATTGATTATGCCTTATCTCAT 295
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 240 AAGGTCTATTCACAGAGTAAACGTTGTCGTTTAGGGCTTATTGATTATGCGTTATCTCAC 299
Query 296 AGCAAGCCTCCTCTTAACTTGTTCGAACAAGATCCTAACGCTCGCTCAAAACTGAAATGT 355
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 AGCAAGCCTCCTCTTAACTTGTTCGAGCAAGATCCTAACGCTCGCTCAAAACTGAAATGT 359
Query 356 AAGCTAACGGGCGATACGGTAAACAAGACTGAGGAACATATTTGGAAGCATATCACTGGA 415
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 AAGCTAACGGGTGATACGGTAAACAAGACTGAGGAACATATTTGGAAGCATATCAATGGA 419
Query 416 CGGCGCTTCCTCAACAGATTAGAGGAGAAGGAACGAGAGAAAGAGTCTGGATCTATTCCA 475
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CGGCGCTTTCTCAACAGATTAGAGGAGAAGGAACGAGAGAAAGAGTCTGGTTCTATTCCA 479
Query 476 GCGGAAGGTGGAGAAACACCGGCGAAGGAAAATGGCGTAGAGGATgaagataagaa-aa- 533
| || |||||||||||||| |||| |||||||||| ||| |||| ||||| ||||| ||
Sbjct 480 GAGGTAGGTGGAGAAACACTGGCGGAGGAAAATGGTGTAAAGGAAGAAGAAAAGAAGAAG 539
Query 534 a-gaagaagaagaagaataataagaag-a-a-gaa-aaa--caagaagtcagttgaaaag 586
| |||||||||||||||||| |||||| | | ||| ||| |||||||||||||||||||
Sbjct 540 AAGAAGAAGAAGAAGAATAAGAAGAAGGAGAAGAAGAAAAACAAGAAGTCAGTTGAAAAG 599
Query 587 aaaaagaaTGGAGAGGATGTTGCTGATGAAATCGAACATGAAAATGATGAAGCTGTTGAG 646
|||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 GAAAAGAATGGCGAGGACGTTGCTGATGAAGTCGAACATGAAAATGATGAAGCTGTTGAG 659
Query 647 GAGGAGCTTGAGTTTTGGATGCCTCCAGATGGAGAGAGGTGGGACTTTGATGATGGAAGA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 GAGGAGCTTGAGTTTTGGATGCCTCCAGATGGAGAGAGGTGGGACTTTGATGATGGAGGA 719
Query 707 GACCGGTGGGGCTCAGATTCAGACTCAGATGTGGAAATGAATGAGGAA-ACAGATCCCAT 765
||||||||||||||||||||||||||||| | |||||||||||||||| | |||||| ||
Sbjct 720 GACCGGTGGGGCTCAGATTCAGACTCAGAAGAGGAAATGAATGAGGAAGA-AGATCCAAT 778
Query 766 AGGTGAATTTGATGAAGATGGAGAGATTAGTATGGAAGAGTCCATACTAATAGGTGAAGT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGTGAATTTGATGAAGATGGAGAGATTAGTATGGAAGAGTCCATACTAATAGGTGAAGT 838
Query 826 TGATGAAGATGGCAAGATTGTTTTGGATGACACTCATGCCAGCAGCAACAAGAGGAAACA 885
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 839 TGATGAAGATGGCAAGATTGTGTTGGATGAGACTCATGCCAGCAGCAACAAGAGGAAACC 898
Query 886 TGAAGAACTCGGTTCCAGTGACCTTCCTTCgaagaagaagaataagaagaagaaaaagaa 945
||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 TGAAGAATTCAGTTCCAATGACCTTCCTTCGAAGAAGAAGACCAAGAAGAAGAAAAAGAA 958
Query 946 gaagaaTGTCGAAGCAACATCGTCGTCATATTAAGTCTGATATGTTTTGTATTTCACTTT 1005
||||||||||||| |||||||||| | | || ||||||||| |||||||||||||||| |
Sbjct 959 GAAGAATGTCGAAACAACATCGTCAT-A-AT-AAGTCTGATCTGTTTTGTATTTCACTAT 1015
Query 1006 GTACT 1010
|||||
Sbjct 1016 GTACT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5