BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14450.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940923 jgi|Araly1|940923|scaffold_601467.1 1923 0.0
> Ahg940923 jgi|Araly1|940923|scaffold_601467.1
Length=1207
Score = 1923 bits (1041), Expect = 0.0
Identities = 1156/1211 (95%), Gaps = 9/1211 (1%)
Strand=Plus/Plus
Query 32 TGTTTCGTTACTCGCAATGAAGGATAATCTTGAAAGAGCAAAACTTATGGTTTCTTCTAC 91
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |
Sbjct 6 TGTTTCGTTACTCGCAATGAAGAATAATCTCGATAGAGCAAAACTTATGGTTTCTTCTGC 65
Query 92 TGTGTTTTCATGGCTTCTTCTGTGTCTCTTTGCAGTGACAACATCTGTTTCAGTTCAGCC 151
||||||||||||| | | ||||||| |||| ||||| ||||||||||||||||
Sbjct 66 TGTGTTTTCATGG------C--T-TCTCTTTACAGTAACAACCGCTGTTTCAGTTCAGCC 116
Query 152 TACGTGTACTTTTCCGGCGATTTACAACTTCGGAGATTCTAATTCCGACACTGGAGGTAT 211
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 117 GACGTGTACTTTCCCGGCGATTTACAACTTCGGAGATTCTAATTCCGACACTGGAGGAAT 176
Query 212 CTCCGCCGCTTTTGAGCCTATTAGGGATCCTTACGGTCAAGGTTTCTTCCACAGACCCAC 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 CTCCGCCGCTTTTGAGCCTATTAGGGATCCTTACGGTCAAGGTTTCTTCCACAGACCCGC 236
Query 272 CGGAAGAGACTCCGATGGCCGTCTCACCATTGATTTCATTGCTGAGCGTCTGGGGTTACC 331
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 237 CGGACGAGACTCCGATGGCCGTCTCACCATTGATTTCATAGCTGAGCGTCTGGAGTTACC 296
Query 332 GTATTTGAGCGCATACTTAAACTCGTTAGGATCAAACTTCAGACATGGAGCAAACTTTGC 391
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTATTTGAGTGCATACTTAAACTCGTTAGGATCAAACTTCAGACATGGAGCAAACTTTGC 356
Query 392 AACAGGTGGTTCAACCATAAGAAGACAGAACGAAACTATCTTTCAATATGGCATTAGTCC 451
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 GACAGGTGGTTCAACCATAAGAAGACAGAACGAAACTATCTTTCAATACGGCATTAGTCC 416
Query 452 ATTCTCTCTCGATATGCAGATTGCTCAATTCGATCAGTTCAAAGCCAGATCTGCACTACT 511
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||
Sbjct 417 ATTCTCTCTCGATATGCAGATTGCTCAATTCGATCAATTCAAAGCAAGATCCGCACAACT 476
Query 512 CTTCACACAAATTAAGAGTAGATATGATAGAGAGAAGCTTCCAAGACAGGAAGAGTTTGC 571
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTTCTCACAAATTAAGAGTAGATATGATAGAGAGAAGCTTCCAAGACAGGAAGAGTTTGC 536
Query 572 AAAGGCTTTGTATACTTTTGATATTGGACAGAATGATCTCTCTGTTGGGTTTCGGACAAT 631
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAAAGCTTTGTATACTTTTGATATTGGACAGAATGATCTCTCTGTTGGGTTTCGGACAAT 596
Query 632 GAGCGTCGATCAACTTAAGGCGACGATACCCGACATTGTCAACCATTTAGCTTCTGCTGT 691
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 597 GAGCGTCGATCAACTTAAGGCGACAATACCCGACATTGTCAGCCATTTAGCTTCTGCTGT 656
Query 692 CCGGAACATATATCAGCAAGGAGGAAGAACATTTTGGGTACACAACACGGGTCCTTTCGG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CCGGAACATATATCAGCAAGGAGGAAGAACATTTTGGGTACACAACACGGGTCCTTTCGG 716
Query 752 TTGTTTACCCGTGAACATGTTTTACATGGGCACTCCTGCACCGGGCTACTTGGACAAATC 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTGTTTACCCGTGAACATGTTTTACATGGGCACTCCTGCACCGGGCTACTTGGACAAATC 776
Query 812 TGGCTGCGTGAAGGCTCAAAATGAAATGGCGATGGAGTTCAACAGAAAGCTCAAGGAAAC 871
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TGGCTGCGTGAAGGCTCAAAATGAAATGGCGATGGAGTTCAACAGGAAGCTCAAGGAAAC 836
Query 872 AGTAATCAATCTCAGAAAAGAACTCACTCAAGCAGCCATTACATATGTTGATGTCTACAC 931
||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 837 AGTAATCAATCTCAGGAAAGAACTCACTAAAGCAGCCATCATATATGTTGATGTCTACAC 896
Query 932 TGCGAAATATGAAATGATGAGCAATCCCAAGAAACTAGGATTTGCAAACCCCTTGAAGGT 991
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 TGCGAAATATGAAATGATGAGCAATCCCAAGAAACTAGGATTTGCAAACCCGTTGAAGGT 956
Query 992 ATGTTGCGGCTACCATGAGAAGTATGATCACATCTGGTGTGGAAACAAAGGGAAAGTGAA 1051
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 ATGTTGCGGCTACCATGAGAAGTATGATCACATCTGGTGTGGGAACAAAGGGAAAGTGAA 1016
Query 1052 CAATACCGAAATCTACGGTGGCTCTTGTCCCAACCCGGTAATGGCTGTGAGCTGGGATGG 1111
|||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 1017 CAATACCGAAATATACGGTGGCTCTTGTTCCAACCCTGCAATGGCTGTGAGCTGGGATGG 1076
Query 1112 AGTTCACTATACGGAAGCTGCAAACAAGCATGTGGCTGACCGTACTCTAAATGGTTTGCT 1171
|||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1077 AGTTCACTATACCGAAGCAGCAAACAAGCATGTGGCTGACCGTACTCTCAGTGGTTTGCT 1136
Query 1172 CACAGACCCTCCAGTTCCAATAACCCGAGCTTGTTATAGACAGTGAGATTTAGTAGAAGC 1231
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 CACAGACCCTCCAGTTCCAATAACTCGAGCTTGTTATAGACAGTGAGATTTAGTAGAAGA 1196
Query 1232 GCTAGATGAAC 1242
|| |||||||
Sbjct 1197 ACTTGATGAAC 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5