BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14460.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488288 jgi|Araly1|488288|fgenesh2_kg.6__1422__AT5G14460.1 2778 0.0
Ahg915837 jgi|Araly1|915837|Al_scaffold_0008_588 152 9e-36
> Ahg488288 jgi|Araly1|488288|fgenesh2_kg.6__1422__AT5G14460.1
Length=1835
Score = 2778 bits (1504), Expect = 0.0
Identities = 1685/1768 (95%), Gaps = 29/1768 (2%)
Strand=Plus/Plus
Query 1 GAGAAAACATCGTGTCGTTTTAATTTATCGTTTAACATCATCACCTTCTCTTCTCCGTTG 60
|||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||
Sbjct 1 GAGAAAACATCGTGTCGTTTTAATATATCGTTTAACA--A-CACAATCTCTTCTCCGTTG 57
Query 61 GAGAACCACTGCAATAATCACCGGAGGTGGATTTCATCTTTCCCCCGCCTCCAGTGTTCT 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAGAACCACTGCAATAATCGCCGGAGGTGGATTTCATCTTTCCCCCGCCTCCAGTGTTCT 117
Query 121 CAAT-AATGGCGAAATCTCTACACTTCACAAGAC---TAATG---TCTTCTTCAGCAAGA 173
| || ||||||||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 118 C-ATAAATGGCGAAGGCTCTACACTTCACAAGACTAATAATGTCTTCTTCTTCAGCAAGA 176
Query 174 ATGTCAATGACTTCTCCTCTCTTCTTCTCCTCAGTCAAACCATGGAGAAACATCCATAAA 233
|||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 177 ATGTGTATGACTTCTTCTCTCTTCTTTTCCTCAGTCAAACCAAGGAGAAACATCCATAAA 236
Query 234 CCCTACTTGGCTTCTCTCTTCCTCTCCACAACATCTACTCGATACCCACTTCAATACGAC 293
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 237 CCCTACTTGGCTTCTCTCTTCCTTTCCACAACATCTACTCGATACCCTCTTCAATACGAC 296
Query 294 ATGATCATCAATCGTCCCACACAATCATCTCTCTCTCAAAACCGTCGTCGTCCCCCTAAA 353
|||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 297 ATGATCATCAATCGTCCCACACAATCTTCTCTCTCTCAAACCCGTCGTCGACCCCCTAAA 356
Query 354 GCCATCGAATCCGGTGCACCTGACTCAGCAGAGCCGGAATTCGATTCATGGGTCGACAAT 413
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 GCAATCGAATCCGGTGCGCCTGACTCAGCAGAGCCAGAATTCGATTCATGGGTCGACAAT 416
Query 414 AAACTGGCTATGGAGCGTGAACAGGGTCGACCCGGTTCTGGAGATCCGGAAATGGATAAA 473
||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 AAACTAGCTTTAGAGCGTGAACAGGGTCGACCCGGTTCAGGAGATCCGGAAATGGATAAA 476
Query 474 GCCAAGAGGAAATACTACAGTAAGAGAAGGAAGAGACTATACGGGTCTGATTCTGAAGAT 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCCAAGAGGAAATACTACAGTAAGAGAAGGAAGAGACTATACGGGTCTGATTCTGAAGAC 536
Query 534 GAGAACAGTAGCAGAAAATCAGATGAAGGATTCGTTGAATTGAAACCTGAAGTTGTTGAA 593
||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 537 GAG---AGCAGCAGAAAATCAGATGAAGGATTCGTTGAATTGAAACCTCAAGTTGTGGAA 593
Query 594 TTTGATAGGTTACATCAGAGAGAAGAGGAATTGTATTTTTATGATACTTTTGCTTATCCA 653
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 TTTGATAGGTTACATCAGAGAGAAGAGGAATTGTATTTCTATGATACTTTTGCTTATCCA 653
Query 654 TGGGAGAAAGATAAGCATTATAAGATGGTGTATCAGTTAGAGAAGAAGTATTATCCTGAC 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGGGAGAAAGATAAGCATTATAAGATGGTGTATCAGTTAGAGAAGAAGTATTATCCTGAT 713
Query 714 CAGTGTTTAGATAAGGCGTTTCTGCAACCTGGAGAAGTTTTGAAGAA--GAG-TGATGAT 770
|||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||
Sbjct 714 CAGTGTTTAGATAAGGCGTTTCTGCAACCTGGAGAAGTTTCCAAGAAGGGTGATGATGAT 773
Query 771 TCTGGGAAAGTTAGAGGGAAGAAGAAAGTAGTAGCAGCACTTGGTGGGAAGAGAAGTGAG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 TCTGGGAAAGTTAGAGGGAAGAAGAAAGTAGTAGCAGCACTTGGTGGGAAGAGAAATGAG 833
Query 831 GTTAAACGAATTGGTATGGAGAATTGTGATGAGGATGATGATAAGTTGGTGTTTTTTGAT 890
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 834 GTTAAACGAATTGGTATGGAGAATTGTGTTGAGGATGATGACAAGTTGGTGTTTTTCGAT 893
Query 891 GAAGTGAAGGAGAAGGAGGAGAAGAAGAAGTCAGAGGATGATGTTGTTGTTGTTACTGAG 950
||||| | | |||||||||||||| | |||||||| ||||||||||||||||
Sbjct 894 GAAGT------G-A--AGGAGAAGAAGAAGCCGGAGGATGA---TGTTGTTGTTACTGAG 941
Query 951 AAGAAAGTGGAACAGTTCTTTAAGGGTTTAACGAAATCTCCCAATGAGAAAGGTATGGCT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 942 AAGAAAGTGGAACAGTTCTTTAAGGGTTTAACGAAATCTCCCAATGAGAAAGGTGTGGCT 1001
Query 1011 AGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGTGAACTTCCTCCTAGA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGTGAACTTCCTCCTAGA 1061
Query 1071 TGGGATGGTCCTAACGGTACAGTGCTTTTGGTGAACAAACCTAAAGGATGGACTTCTTTC 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1062 TGGGATGGTCCTAACGGTACAGTGCTTTTGGTGAACAAACCTAAAGGATGGACTTCCTTC 1121
Query 1131 ACTGTCTGTGGTAAGCTACGACGATTAGTCAAAGTGAAAAAGGTGGGTCATGCTGGAACA 1190
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1122 ACTGTCTGTGGTAAGCTACGACGATTAGTCAAAGTGAAAAAGGTGGGACATGCTGGAACA 1181
Query 1191 CTTGATCCCATGGCTACTGGTCTATTAATCGTCTGCGTCGGTAAAGCCACTAAGGTTGTT 1250
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1182 CTTGATCCCATGGCTACAGGTCTGTTAATCGTCTGCATCGGTAAAGCCACTAAGGTTGTT 1241
Query 1251 GACAGATACCAAGGTATGATCAAAGGTTATAGCGGAGTTTTTCGTCTTGGTGAAGCCACT 1310
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1242 GACAGATACCAAGGTATGATCAAAGGTTACAGCGGAGTTTTTCGTCTTGGTGAAGCCACT 1301
Query 1311 TCAACTCTAGACGCTGACTCTCCTGTGATTCAGCGAGAGTCTTGGGAGCATATAAAAGAT 1370
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1302 TCAACTTTAGACGCTGACTCTCCTGTGATTCAGCGAGAGCCTTGGGAGCATATAAAAGAT 1361
Query 1371 GATGACATTAAGAAAGCTTTGACATCATTTCTTGGAGAAATATGGCAAGTTCCACCGATG 1430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1362 GATGACATTAAGAAAGCTTTGACATCATTTCTTGGAGAAATATGGCAAGTTCCACCAATG 1421
Query 1431 TTCTCTGCGATAAAAGTTGGAGGTGAGAAGATGTACGAGAAGGCAAGAAGAGGAGAAACC 1490
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1422 TTCTCTGCGATAAAAGTTGGAGGCGAGAAGATGTACGAGAAGGCAAGAAGAGGAGAAACC 1481
Query 1491 GTAGAGCTTTCTCCAAGAAGAATTTCAATTTTCCAGTTTGACATTGAACGCAGTTTAGAT 1550
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1482 GTAGAGCTTTCTCCAAGAAGAATTTCGATTTTCCAGTTTGACATTGAACGCAGTTTAGAT 1541
Query 1551 GACAGACAAAATCTGATATTCCGGGTTATATGCTCTAAGGGTACATACATAAGATCTCTC 1610
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GACAGACAAAATCTGATATTTCGGGTTATATGCTCTAAGGGTACATACATAAGATCTCTC 1601
Query 1611 TGTGCAGATCTTGCGAAAGCTCTTGGAAGTTGTGCTCACCTCACTGCTCTCCGGCGAGAT 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TGTGCAGATCTTGCGAAAGCTCTTGGAAGTTGTGCTCACCTCACTGCTCTCCGGCGAGAT 1661
Query 1671 TCAATTGGTGAATATTCTGCTAATGATGCTTGGGAATTCAATGAGTTAGAAGCAGCAATC 1730
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1662 TCAATCGGTGAATATTCTGCTAACGATGCTTGGGAATTCAATGAGTTAGAAGCAGCAATC 1721
Query 1731 ACTAAAAACTACTTCTAGAAGGAAACAA 1758
||||||||||||||||||||| ||||||
Sbjct 1722 ACTAAAAACTACTTCTAGAAGAAAACAA 1749
> Ahg915837 jgi|Araly1|915837|Al_scaffold_0008_588
Length=393
Score = 152 bits (82), Expect = 9e-36
Identities = 100/108 (93%), Gaps = 3/108 (3%)
Strand=Plus/Plus
Query 996 GAGAAAGGTATGGCTAGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGT 1055
||||| ||| |||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 GAGAATGGTGTGGCTA---GTGGTGGTGATGGAGAACCTTTTCTTGTTACAAGAAACGGT 197
Query 1056 GAACTTCCTCCTAGATGGGATGGTCCTAACGGTACAGTGCTTTTGGTG 1103
||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 198 GAACTTCCTCCTAGATGGGGTGGTCCTAACGGTACAATGCTTTTGGTG 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5