BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14470.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325917 jgi|Araly1|325917|fgenesh1_pm.C_scaffold_6001137 1746 0.0
Ahg477351 jgi|Araly1|477351|fgenesh2_kg.3__52__AT3G01640.1 915 0.0
> Ahg325917 jgi|Araly1|325917|fgenesh1_pm.C_scaffold_6001137
Length=1101
Score = 1746 bits (945), Expect = 0.0
Identities = 1050/1102 (95%), Gaps = 2/1102 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCGAATCCTAAACCGGCGATTTCTGGCAAAGATAATGG-CGTGTTCGAGCATCG 59
|||||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 1 ATGGATCCGAATCCGAAACCGGCGATTTCAGGCAATGATAA-GGCCGTGTTCGAGCATCG 59
Query 60 CTCGTTTGCTAGAATCGGGTTTCTTGGAAACCCTAGCGATGTTTACTTCGGTCGTACGAT 119
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 60 TTCGTTCGCTAGAATCGGGTTTCTGGGAAACCCTAGCGACGTTTACTTCGGTCGTACGAT 119
Query 120 TTCATTTACCATTGGTAATTTCTGGGCGTGGGCTAAGCTCGAACCATCTGATCATCTCTT 179
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 120 TTCATTTACCATTGGTAATTTCTGGGCTTGGGCTAAGCTCGAACCATCCGATCATCTTTT 179
Query 180 GATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGATTCTCTCGATAATCTCGTTTA 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGATTCTCTCGACAATCTCGTTTA 239
Query 240 TCGATTGGAAAATGATGGATACTATGGAGGTGTAAGGTTACTAATGGCGATTTGCAAAGT 299
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 240 TCGATTGGAAAATGATGGATACTACGGAGGTGTAAGGTTGCTAATGGCGATTTGCAAAGT 299
Query 300 ATTCCGAAACTATTGCAAAGAAAATGGTATACAACTTCATGACAAAAACTTCACTCTTTC 359
|||||| |||||||||||||| ||||| |||||||||||||| ||||||||| |||||||
Sbjct 300 ATTCCGCAACTATTGCAAAGATAATGGCATACAACTTCATGAAAAAAACTTCTCTCTTTC 359
Query 360 TTATGATACCAATATCCCAAGACAGACGGGGCTTTCAGGTTCTAGTGCAATTGTATCTGC 419
|||||||||||||||||| || ||||| |||||||| ||||||||||| |||||||||||
Sbjct 360 TTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCATTGTATCTGC 419
Query 420 TGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAATCGAAGTCCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAATCGAAGTCCG 479
Query 480 ACCTAACCTTATTCTTAATGCGGAGAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACCG 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACCTAACCTTATTCTCAATGCGGAGAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACCG 539
Query 540 TGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAAAGAGCATATGGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAAAGAACATATGGA 599
Query 600 TAAAGTTGGATATGGGATATACACTATAATGGATATCAATCTTCTTCCTCCTCTGCATCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAAAGTTGGATATGGGATATACACTATAATGGATATCAATCTTCTTCCTCCTCTGCATCT 659
Query 660 CATCTATGCTGAGAATCCTAGTGACTCTGGCAAGGTACATAGCACGGTTCGTAGAAGGTG 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATCTATGCTGAGAATCCAAGTGACTCTGGCAAGGTACATAGCACGGTTCGTAGAAGGTG 719
Query 720 GTTAGACGGTGATGAGTTTATAATATCATCAATGGCAGAAATTGCAAAATTAGCTGAAGA 779
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTAGATGGTGATGAGTTCATAATATCATCAATGGCAGAAATTGCAAAATTAGCTGAAGA 779
Query 780 AGGTCGAACTGCATTGCTTAAGAAAGATTACTCCAACCTCAAGGAACTCATGAACCGTAA 839
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 780 AGGTCGAACTGCATTACTTAAAAAAGATTACTCCAAACTCAAGGAACTCATGAACCGTAA 839
Query 840 CTTCGATCTTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGAGCTATGAACATAGAGAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 CTTCGATCTTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGAGCTATGAACATAGAAAT 899
Query 900 GGTGGAAGTGGCACGTAAGATCGGCGCAGCTGCAAAGTTCACTGGAAGCGGAGGAGCTGT 959
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 900 GGTGGAAGTGGCTCGTAAGATCGGAGCAGCTGCAAAGTTCACTGGAAGCGGAGGGGCTGT 959
Query 960 GGTGGTTTTCTGCCCTGAGGGGCCATCTCAGGTCAAACTTCTAGAAGAAGAATGTCGGAA 1019
||| ||||||||||| || || ||||||||||||||||| || |||||||||||||| ||
Sbjct 960 GGTTGTTTTCTGCCCCGATGGACCATCTCAGGTCAAACTCCTCGAAGAAGAATGTCGAAA 1019
Query 1020 ATCTGGATTTATCGTTGAGCCAGTAAAGCTTGTGCCTACCCGCCTCAGTAGTTCTGATAT 1079
|||||||||||| |||||||||||||||||||||||||| ||||||| || ||||||| |
Sbjct 1020 ATCTGGATTTATAGTTGAGCCAGTAAAGCTTGTGCCTACACGCCTCAATAATTCTGATCT 1079
Query 1080 TAAGACATTATCAAAAACATGA 1101
|||||| ||||||||| |||||
Sbjct 1080 TAAGACTTTATCAAAACCATGA 1101
> Ahg477351 jgi|Araly1|477351|fgenesh2_kg.3__52__AT3G01640.1
Length=1191
Score = 915 bits (495), Expect = 0.0
Identities = 842/1008 (84%), Gaps = 29/1008 (3%)
Strand=Plus/Plus
Query 52 GAGCATCGCTCGTTTGCTAGAATCGGGTTTCTTGGAAACCCTAGCGATGTTTACTTCGGT 111
|||||||| || || ||| | ||||| || || ||||| || |||||||||||||||||
Sbjct 89 GAGCATCGGTCCTTCGCTCGGATCGGATTCCTCGGAAATCCGAGCGATGTTTACTTCGGG 148
Query 112 CGTACGATTTCATTTACCATTGGTAATTTCTGGGCGTGGGCT-AAGCTCGAACCATCTG- 169
||||| || ||||| ||||| |||||||||||||| | | | ||||| || || || |
Sbjct 149 CGTACAATATCATTGACCATCGGTAATTTCTGGGCCTCCG-TGAAGCTGGAGCCGTC-GC 206
Query 170 ATCATCTCTTGATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGA-TTCTCTCGAT 228
| |||||| | ||||| || ||||||||||||||||| ||||||||| | ||||||||
Sbjct 207 AGCATCTCGTAATCAAGCCGCATCCATTCCATGATCTCGTCCAGTTC-ACCTCTCTCGAC 265
Query 229 AATCTCGTTTATCGATTGGAAAATGATGGATACTATGGAGGTGTAAGGTTACTAATGGCG 288
||||| | |||| ||| ||||||| || ||||| || ||||||||||| |||||||||
Sbjct 266 CATCTCCTGCATCGTTTGCAAAATGAAGGTTACTACGGTGGTGTAAGGTTGCTAATGGCG 325
Query 289 ATTTGCAAAGTATTCCGAAACTATTGCAAAGAAAATGGTATACAACTTCATGACAA--AA 346
|| || ||||| ||||| ||||| |||||||| |||| || |||||||| ||| |
Sbjct 326 ATATGTAAAGTGTTCCGTAACTACTGCAAAGACAATGACATTCAACTTCA--CCAAGGCA 383
Query 347 ACTTCACTCTTTCTTATGATACCAATATCCCAAGACAGACGGGGCTTTCAGGTTCTAGTG 406
||||| ||||||||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct 384 ACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTG 443
Query 407 CAATTGTATCTGCTGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCA 466
| || ||||| ||||| |||| |||||||||||||||||||||||||||||| | ||||
Sbjct 444 CCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTTCTACAATGTCAGGCATTTGATCA 503
Query 467 GAA-T-CGAAGTCCGACCTAACCTTATTCTTAATGCGGAGAAAGAACTTGGTATTGTTGC 524
|| | | ||||||| |||||| || |||| | ||| |||||||||||||||||||||||
Sbjct 504 -AAGTAC-AAGTCCGCCCTAACATTGTTCTCAGTGCAGAGAAAGAACTTGGTATTGTTGC 561
Query 525 TGGTCTTCAAGACCGTGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAG 584
||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 562 TGGTCTTCAAGACAGGGTTGCTCAGGTCTATGGTGGT---CTTGTTCACATGGATTTTAG 618
Query 585 TAAAGAGCATATGGATAAAGTTGG-ATATGGGATATACACTA-TAATGGATATCAATCTT 642
||| ||||| ||||| ||| |||| | ||||||| || ||| || ||||||||| |||
Sbjct 619 TAAGGAGCACATGGACAAA-TTGGGACATGGGATTTATACTCCTA-TGGATATCAGTCTC 676
Query 643 CTTCCTCCTCTGCATCTCATCTATGCTGAGAATCCTAGTGACTCTGGCAAGGTACATAGC 702
|| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 677 CTCCCTCCTTTGCATCTCATCTATGCTGAGAATCCTAGCGACTCAGGGAAGGTACATAGT 736
Query 703 ACGGTTCGT-AGAAGGTGGTTAGACGGTGATGAGTTTATAATATCATCAATGGCAGAAAT 761
| |||||| | ||| |||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 737 ATGGTTCGGCA-AAGATGGTTAGACGGTGATGAGTTTATAATCTCATCAATGAAAGAAGT 795
Query 762 TGCAAA-ATTAGCTGAAGAAGGTCGAACTGCATTGCTTAAGAAAGATTACTCCAACCTCA 820
|| ||| || ||| ||||||||||| |||||||| ||||| || || | ||||| ||
Sbjct 796 TGGAAATAT-AGCAGAAGAAGGTCGCACTGCATTACTTAACAAGGACCATTCCAAACTTG 854
Query 821 AGGAACTCATGAACCGTAACTTCGATC-TTCGAAGGAGTATGTTTGGAGATGAATGTTTG 879
|||||||||||||| ||| ||||| | |||| ||| | |||||||| |||||||| ||
Sbjct 855 TGGAACTCATGAACCTTAATTTCGA-CATTCGGAGGCGGATGTTTGGGGATGAATGCTTA 913
Query 880 GGAGCTATGAACATAGAGATGGTGGAAGTGGCACGTAAGATCGGCGCAGCTGCAAAGTTC 939
||||| ||||||||||||||||||||||| ||| | | | | || |||||| ||||||||
Sbjct 914 GGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGGGCAGCTTCAAAGTTC 973
Query 940 ACTGGAAGCGGAGGAGCTGTGGTGGTTTTCTGCCCTGAGGGGCCATCTCAGGTCAAACTT 999
|||||||| |||||||| |||||||||||||||||||| || || |||||||| || |||
Sbjct 974 ACTGGAAGTGGAGGAGCGGTGGTGGTTTTCTGCCCTGAAGGTCCGTCTCAGGTGAAGCTT 1033
Query 1000 CTAGAAGAAGAATGTCGGAAATCTGGATTTAT-CGTTGAGCCAGTAAA 1046
|| ||||||||||| |||||||| |||||||| | || |||| |||||
Sbjct 1034 CTGGAAGAAGAATGCCGGAAATCAGGATTTATGC-TTCAGCCGGTAAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5