BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14480.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488289 jgi|Araly1|488289|fgenesh2_kg.6__1423__AT5G14480.1 2495 0.0
Ahg920164 jgi|Araly1|920164|scaffold_101445.1 302 8e-81
> Ahg488289 jgi|Araly1|488289|fgenesh2_kg.6__1423__AT5G14480.1
Length=1740
Score = 2495 bits (1351), Expect = 0.0
Identities = 1585/1690 (94%), Gaps = 47/1690 (3%)
Strand=Plus/Plus
Query 1 GTTTTCTTAAGAGGAGAAGGATTAGATTTAAGC-GAGattttttcggata--ta-----t 52
|||||||||||||||||||||||||| |||| | |||||||||||||||| || |
Sbjct 1 GTTTTCTTAAGAGGAGAAGGATTAGA-TTAAACAGAGATTTTTTCGGATATTTATTCTCT 59
Query 53 -ata-ttctctg-------ttt-ttctttaattaaattgtttcgtg-tttttgtttcgag 101
| | ||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 60 CAGACTTCTCTGTTTTTTTTTTCTTCTTTAATTAAATTGTTTCGTGTTTTTTGTTTCGAG 119
Query 102 ttttcttcataaagttttgatttttgtcgggcttcgattttcgGGGTCCGAGATATTCTT 161
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 -TTTCTTCATAAAGTTTTGATTTTTGTCGGGCTTCGATTTTCGGGGTCCGAGAGATTCTT 178
Query 162 CTTCTTCTTCGCGATAATTTCCCCCGAGAAAACTCTTCTGGGTAAAATCATGTCCGATGG 221
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 179 CTTCTTATTCGCGAAAATTTCCCCCGAGAAAACTCTTCTGGGTATAACCATGTCCGATGG 238
Query 222 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 298
Query 282 TCGAGCAGCCAAGGCCTTCTCTAGGGTTAGATGTGTACTACGAGGATTTGATTTCAAGAC 341
||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 299 TCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGCTACGAGGACTTGATTTCAAGAC 358
Query 342 ATATATCTTCTTCTTCACCATTGTCCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 401
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 GTATATCTTCCTCTTCACCATTGTGCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 418
Query 402 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCAAAGCCGTTTCAAACGCT 461
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCCAAGCCGTTTCAAACGCT 478
Query 462 ACCCCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCATGGCTGGAA 521
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 TCCTCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCACGGCTGGAA 538
Query 522 ACACCGTGAATCTCCGAGAAGGGTCTTTGATGCTGTGTTGTTCAGCAATGAAGTTGATAT 581
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 ACACCGCGAATCTCCCAGAAGGGTCTTTGATGCTGTCTTGTTCAGCAATGAAGTTGATAT 598
Query 582 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATAACACAGTTTGTGATCCTTGAATC 641
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 599 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATTACACAGTTTGTAATTCTTGAATC 658
Query 642 AAACTCTACTTTCACTGGTTTGCCTAAACCTTTGGTTTTCAATGGGAATCGAGCGAAGTT 701
|||||| ||||||||||||||||||||||| || ||||||||||||||||| | ||||||
Sbjct 659 AAACTCGACTTTCACTGGTTTGCCTAAACCGTTAGTTTTCAATGGGAATCGGGGGAAGTT 718
Query 702 CGAGTTTGCTGAGCCGAGGCTGAGTTATGGGAACATTGCAGGACGATTCAAGAAAGGAGA 761
|||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 719 CGAGTTTGTTGAGCCGAGGCTGTCTTATGGGAACATTGCAGGAAGATTCAAGAAAGGCGA 778
Query 762 AAACCCGTTTGTGGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTGGC 821
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 AAACCCGTTTGTCGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTCGC 838
Query 822 TGGTATAGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 881
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGGTATCGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 898
Query 882 TACCATCAATCTGCTTAGATGGTGCGATGGATACCCACCGATTCTTCATCTTCAGTTGAA 941
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 899 TACCATCAATCTGCTTAGATGGTGCGACGGATACCCTCCGATTCTTCATCTTCAGTTGAA 958
Query 942 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1018
Query 1002 TCAGTACAAGCCTGGGAAGACTC-GATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1060
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCAGTACAAGCCGGGGAAGAC-CAGATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1077
Query 1061 CAGATTCTGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGTGAGTTTATATTCAAGA 1120
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1078 CAGATTCGGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGA 1137
Query 1121 TGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGAAAGCGTACAGTCACAATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1197
Query 1181 TACAAGATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGAGTATACGT 1240
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1198 TCCAAGATGTGATCTGTAAAGGAACTGATCTGTTCGACATGCTTCCTGAAGAGTATACAT 1257
Query 1241 TCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTATTCCGCAGTTCATCTAC 1300
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1258 TCAGGGAAATCATCGGTAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCC 1317
Query 1301 CAGCTCATCTGATAGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CAGCTCATCTGATCGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1377
Query 1361 GGGAAAGTGGCTGATAAGGGTTTGTTCTTATCAGTCTTTGTAGTGTTAGGTAATTTGGT- 1419
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1378 GGGAAAGTGGCTGATAAGGGTTTGTACTTATCAGCCTTTGTAGTGTTAGGTAATTTGGTT 1437
Query 1420 GGGGGAAA-CGGCTTATTATCAGTAGAGGGAGTGTGGAACAGAGAATGGTACAGTTTCTT 1478
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1438 GGGGGAAAACGGCTTATTATCAGTAGAGGGAGTGTGAAACAGAGAATGGTACAGTTTCTT 1497
Query 1479 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1557
Query 1539 AGGGTATATAACAACCTT-GTCT-GCTTATAATCTCATACTGACCCATATGTTCCAATGT 1596
|||||||||||| | || | || |||||||||||||||||||||||| ||||||||||
Sbjct 1558 AGGGTATATAAC--C-TTAG-CTTGCTTATAATCTCATACTGACCCAT--GTTCCAATGT 1611
Query 1597 GTTCCCAGAGCTTGTTTTGGGAAGTTTTGCTGGAATAGtctctctctctctctc-tctct 1655
| | || || ||||||||||||||||||||||||| ||| |||| | ||| |
Sbjct 1612 -T-----G---TT-TT--GGGAAGTTTTGCTGGAATAGTCTCTTTCTGTCTC-CATCTTT 1658
Query 1656 ctctctctct 1665
|||| |||||
Sbjct 1659 CTCTTTCTCT 1668
Score = 163 bits (88), Expect = 4e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1685 tctctctctgtctccatctatctctttctctATTAACTTTCAAACTATTTTCATCATACT 1744
||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1638 TCTCTTTCTGTCTCCATCTTTCTCTTTCTCTTTTTACTTTCAAACTATTTTCATCATACT 1697
Query 1745 CTCGCTTTTAGACTGTACAATTTAGTGATTTCTTTACATTATT 1787
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1698 CTCGCTTTTAGTCTGTACAATTTAGTGATTTCTTTACATTATT 1740
> Ahg920164 jgi|Araly1|920164|scaffold_101445.1
Length=1221
Score = 302 bits (163), Expect = 8e-81
Identities = 720/978 (74%), Gaps = 82/978 (8%)
Strand=Plus/Plus
Query 430 TGGGAATCTCCACC-AAAGCCGTTTCA-AACGCTACCCCATTACTACCATGAGAACGCCT 487
|||||||| ||||| ||| || ||||| || | || ||||||||||||||||| || |
Sbjct 256 TGGGAATCACCACCTAAA-CCTTTTCATGAC-ATTCCTCATTACTACCATGAGAATGCTT 313
Query 488 CCATGGCA-ACACTCTGCAGTCTTCATGGCT-GGAAACACCGTGAAT-CTCCGAGAAGGG 544
| |||| | || || || | || ||||||| || | || |||| | || ||| | |
Sbjct 314 CTATGG-AGACTCTTTGTAAACTCCATGGCTGGGGTGTA-CGAGAATAC-CCTAGACGAG 370
Query 545 TCTT-TGATGCTGTGTTGTTCAGCAATGAAG-TTGATATGCTTACTATCCGGTGGAAAGA 602
| || |||||| || |||||||| || | || ||||||| || || | ||||||| |||
Sbjct 371 T-TTATGATGCGGTTTTGTTCAGTAACG-AGCTTGATATCCTCGCTGTTCGGTGGAGAGA 428
Query 603 GCTT-TATCCTTACATAACACAGTTTGTGATCCTTGAATCAAACTCTACTTTCACTGGTT 661
|| | ||||||||| || |||||||| | || ||||||||| | || |||||||| |
Sbjct 429 -ATTGTTTCCTTACATCACTCAGTTTGTCCTTCTAGAATCAAACACGACGTTCACTGGGT 487
Query 662 TGCCTAAACCT-TTG-GTTTTCAATGGGAATCGAG-CGAAGTTCGAGTTTGCT-GAGCCG 717
||||||| ||| ||| |||| | || | |||| | ||||| ||||| | ||| |
Sbjct 488 TGCCTAAGCCTCTTGTGTTTGC--TGCTCACCGAGATG-AGTTCAAGTTT-ATCGAGTC- 542
Query 718 AGGC-TGAGTTATGGGAAC-ATTGCAGGACGATTCAAGAAAGGAG-AAAACCCGTTTGT- 773
| || ||| |||| || || ||| ||| |||| ||||| | | || |||||| |
Sbjct 543 ACGCTTGACTTAT-GGTACTGTTGGTGGAAGATTTGTCAAAGG-GCAGAATCCGTTT-TA 599
Query 774 GGAAGAAGCTTACCAGAGGA-TTGCAT-TGGATCAGCTGATCAGACTGGCTGGTA-TAGA 830
||||| ||||| ||| || | || | | |||||||| | ||| | ||||| | ||
Sbjct 600 CGAAGAGGCTTATCAG-CGAGTAGC-TCTAGATCAGCTTCTGAGAATCGCTGGGATTA-C 656
Query 831 AGAAGATGATC-TGTTGATAATGTCTGATGTTGATGAGATTCCTAG-CGCTCATACCATC 888
|| ||||| | ||||| ||||||||||||||||||||||||| || | || |||||
Sbjct 657 TGATGATGA-CTTGTTGTTAATGTCTGATGTTGATGAGATTCCAAGTAG-ACACACCATT 714
Query 889 AATCTGCTT-AGATGGTGCGATGGATA-CCC-ACCGATTCTTCATCTTCAGTTGAAAAAC 945
|| || || || ||||||||| |||| ||| | ||| |||||||| | | | || |||
Sbjct 715 AACCT-TTTAAGGTGGTGCGAT-GATATCCCGA-AGATCCTTCATCTGCGGCTCAAGAAC 771
Query 946 TA-CTTATACTCATTCG-AGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCATC 1003
|| ||| ||||| |||| | | ||| ||||| ||||| |||||||||||||| | || |
Sbjct 772 TATCTT-TACTCGTTCGAATTCCTT-GTTGATAACAAGAGCTGGAGAGCTTCCGTCCA-C 828
Query 1004 AG-TACAAGCCTGGG-AAGACTCGATACGCTCATT-TC--C-GTC-AAGGCAACACTCTT 1056
|| || || | ||| ||||| || || ||||||| || | ||| | | || | ||
Sbjct 829 AGATATGAGAC-GGGTAAGACACGGTATGCTCATTATCGACAGTCGGATG-AA-A-TC-- 882
Query 1057 TTAGCAGATTCTGGTTGGCATTGCAG-TTTCTGTTTCAGGCACATCAGTGAGTTTATATT 1115
|| || ||| | || ||||| || || ||| || ||| | | |||||||||||||||||
Sbjct 883 TTGGCGGATGCAGGATGGCACTGTAGCTTT-TGCTTCCGACGGATCAGTGAGTTTATATT 941
Query 1116 CAAGATGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTC-TCATTATCTA-AACCCA 1173
|||||||||||| || || || ||||| | || || || | ||||| ||| || ||
Sbjct 942 CAAGATGAAAGCTTATAGCCATAATGATAGAGTGAGGTT-TGGTCATT-TCTTGAATCCT 999
Query 1174 AAAAGAATACAA-GATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGA 1232
|| ||| | ||| || || || || |||||| ||||||| |||||||||||||| |||||
Sbjct 1000 AAGAGAGTTCAAAGA-GTTATATGCAAAGGAGCTGATCTTTTCGATATGCTTCCCGAAGA 1058
Query 1233 GTATACGTTCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTAT-TCCGCAG 1291
|||||| |||| ||| || || || ||| | ||||||||||||| |||| | || || |
Sbjct 1059 GTATACCTTCAAGGAGATAATAGGAAAAATGGGTCCAATCCCGCATTCTT-TCTCAGCCG 1117
Query 1292 TTCATCTACCAGC-TCATCTGATAGAAAAAGCTGAGA-GTTACAAATACTTGTTACCTGG 1349
||||||| || | | |||| | ||||| || || | || ||| || | | ||||| ||
Sbjct 1118 TTCATCTTCCTTCGT-ATCTCCTGGAAAACGCGGATAAGT-ACAGATTCCTCTTACC-GG 1174
Query 1350 GAACT-GCATAAGGGAAA 1366
||| | ||||||| ||||
Sbjct 1175 GAAATTGCATAAGAGAAA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5