BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14480.1 Length=1787 Score E Sequences producing significant alignments: (Bits) Value Ahg488289 jgi|Araly1|488289|fgenesh2_kg.6__1423__AT5G14480.1 2495 0.0 Ahg920164 jgi|Araly1|920164|scaffold_101445.1 302 8e-81 > Ahg488289 jgi|Araly1|488289|fgenesh2_kg.6__1423__AT5G14480.1 Length=1740 Score = 2495 bits (1351), Expect = 0.0 Identities = 1585/1690 (94%), Gaps = 47/1690 (3%) Strand=Plus/Plus Query 1 GTTTTCTTAAGAGGAGAAGGATTAGATTTAAGC-GAGattttttcggata--ta-----t 52 |||||||||||||||||||||||||| |||| | |||||||||||||||| || | Sbjct 1 GTTTTCTTAAGAGGAGAAGGATTAGA-TTAAACAGAGATTTTTTCGGATATTTATTCTCT 59 Query 53 -ata-ttctctg-------ttt-ttctttaattaaattgtttcgtg-tttttgtttcgag 101 | | ||||||| ||| ||||||||||||||||||||||| ||||||||||||| Sbjct 60 CAGACTTCTCTGTTTTTTTTTTCTTCTTTAATTAAATTGTTTCGTGTTTTTTGTTTCGAG 119 Query 102 ttttcttcataaagttttgatttttgtcgggcttcgattttcgGGGTCCGAGATATTCTT 161 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 120 -TTTCTTCATAAAGTTTTGATTTTTGTCGGGCTTCGATTTTCGGGGTCCGAGAGATTCTT 178 Query 162 CTTCTTCTTCGCGATAATTTCCCCCGAGAAAACTCTTCTGGGTAAAATCATGTCCGATGG 221 |||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 179 CTTCTTATTCGCGAAAATTTCCCCCGAGAAAACTCTTCTGGGTATAACCATGTCCGATGG 238 Query 222 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 298 Query 282 TCGAGCAGCCAAGGCCTTCTCTAGGGTTAGATGTGTACTACGAGGATTTGATTTCAAGAC 341 ||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 299 TCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGCTACGAGGACTTGATTTCAAGAC 358 Query 342 ATATATCTTCTTCTTCACCATTGTCCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 401 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 359 GTATATCTTCCTCTTCACCATTGTGCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 418 Query 402 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCAAAGCCGTTTCAAACGCT 461 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 419 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCCAAGCCGTTTCAAACGCT 478 Query 462 ACCCCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCATGGCTGGAA 521 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 479 TCCTCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCACGGCTGGAA 538 Query 522 ACACCGTGAATCTCCGAGAAGGGTCTTTGATGCTGTGTTGTTCAGCAATGAAGTTGATAT 581 |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 539 ACACCGCGAATCTCCCAGAAGGGTCTTTGATGCTGTCTTGTTCAGCAATGAAGTTGATAT 598 Query 582 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATAACACAGTTTGTGATCCTTGAATC 641 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 599 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATTACACAGTTTGTAATTCTTGAATC 658 Query 642 AAACTCTACTTTCACTGGTTTGCCTAAACCTTTGGTTTTCAATGGGAATCGAGCGAAGTT 701 |||||| ||||||||||||||||||||||| || ||||||||||||||||| | |||||| Sbjct 659 AAACTCGACTTTCACTGGTTTGCCTAAACCGTTAGTTTTCAATGGGAATCGGGGGAAGTT 718 Query 702 CGAGTTTGCTGAGCCGAGGCTGAGTTATGGGAACATTGCAGGACGATTCAAGAAAGGAGA 761 |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| || Sbjct 719 CGAGTTTGTTGAGCCGAGGCTGTCTTATGGGAACATTGCAGGAAGATTCAAGAAAGGCGA 778 Query 762 AAACCCGTTTGTGGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTGGC 821 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 779 AAACCCGTTTGTCGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTCGC 838 Query 822 TGGTATAGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 881 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GGGTATCGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 898 Query 882 TACCATCAATCTGCTTAGATGGTGCGATGGATACCCACCGATTCTTCATCTTCAGTTGAA 941 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 899 TACCATCAATCTGCTTAGATGGTGCGACGGATACCCTCCGATTCTTCATCTTCAGTTGAA 958 Query 942 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1018 Query 1002 TCAGTACAAGCCTGGGAAGACTC-GATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1060 |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1019 TCAGTACAAGCCGGGGAAGAC-CAGATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1077 Query 1061 CAGATTCTGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGTGAGTTTATATTCAAGA 1120 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1078 CAGATTCGGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGA 1137 Query 1121 TGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1180 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1138 TGAAAGCGTACAGTCACAATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1197 Query 1181 TACAAGATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGAGTATACGT 1240 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1198 TCCAAGATGTGATCTGTAAAGGAACTGATCTGTTCGACATGCTTCCTGAAGAGTATACAT 1257 Query 1241 TCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTATTCCGCAGTTCATCTAC 1300 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1258 TCAGGGAAATCATCGGTAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCC 1317 Query 1301 CAGCTCATCTGATAGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1360 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 CAGCTCATCTGATCGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1377 Query 1361 GGGAAAGTGGCTGATAAGGGTTTGTTCTTATCAGTCTTTGTAGTGTTAGGTAATTTGGT- 1419 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1378 GGGAAAGTGGCTGATAAGGGTTTGTACTTATCAGCCTTTGTAGTGTTAGGTAATTTGGTT 1437 Query 1420 GGGGGAAA-CGGCTTATTATCAGTAGAGGGAGTGTGGAACAGAGAATGGTACAGTTTCTT 1478 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1438 GGGGGAAAACGGCTTATTATCAGTAGAGGGAGTGTGAAACAGAGAATGGTACAGTTTCTT 1497 Query 1479 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1557 Query 1539 AGGGTATATAACAACCTT-GTCT-GCTTATAATCTCATACTGACCCATATGTTCCAATGT 1596 |||||||||||| | || | || |||||||||||||||||||||||| |||||||||| Sbjct 1558 AGGGTATATAAC--C-TTAG-CTTGCTTATAATCTCATACTGACCCAT--GTTCCAATGT 1611 Query 1597 GTTCCCAGAGCTTGTTTTGGGAAGTTTTGCTGGAATAGtctctctctctctctc-tctct 1655 | | || || ||||||||||||||||||||||||| ||| |||| | ||| | Sbjct 1612 -T-----G---TT-TT--GGGAAGTTTTGCTGGAATAGTCTCTTTCTGTCTC-CATCTTT 1658 Query 1656 ctctctctct 1665 |||| ||||| Sbjct 1659 CTCTTTCTCT 1668 Score = 163 bits (88), Expect = 4e-39 Identities = 98/103 (95%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1685 tctctctctgtctccatctatctctttctctATTAACTTTCAAACTATTTTCATCATACT 1744 ||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 1638 TCTCTTTCTGTCTCCATCTTTCTCTTTCTCTTTTTACTTTCAAACTATTTTCATCATACT 1697 Query 1745 CTCGCTTTTAGACTGTACAATTTAGTGATTTCTTTACATTATT 1787 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1698 CTCGCTTTTAGTCTGTACAATTTAGTGATTTCTTTACATTATT 1740 > Ahg920164 jgi|Araly1|920164|scaffold_101445.1 Length=1221 Score = 302 bits (163), Expect = 8e-81 Identities = 720/978 (74%), Gaps = 82/978 (8%) Strand=Plus/Plus Query 430 TGGGAATCTCCACC-AAAGCCGTTTCA-AACGCTACCCCATTACTACCATGAGAACGCCT 487 |||||||| ||||| ||| || ||||| || | || ||||||||||||||||| || | Sbjct 256 TGGGAATCACCACCTAAA-CCTTTTCATGAC-ATTCCTCATTACTACCATGAGAATGCTT 313 Query 488 CCATGGCA-ACACTCTGCAGTCTTCATGGCT-GGAAACACCGTGAAT-CTCCGAGAAGGG 544 | |||| | || || || | || ||||||| || | || |||| | || ||| | | Sbjct 314 CTATGG-AGACTCTTTGTAAACTCCATGGCTGGGGTGTA-CGAGAATAC-CCTAGACGAG 370 Query 545 TCTT-TGATGCTGTGTTGTTCAGCAATGAAG-TTGATATGCTTACTATCCGGTGGAAAGA 602 | || |||||| || |||||||| || | || ||||||| || || | ||||||| ||| Sbjct 371 T-TTATGATGCGGTTTTGTTCAGTAACG-AGCTTGATATCCTCGCTGTTCGGTGGAGAGA 428 Query 603 GCTT-TATCCTTACATAACACAGTTTGTGATCCTTGAATCAAACTCTACTTTCACTGGTT 661 || | ||||||||| || |||||||| | || ||||||||| | || |||||||| | Sbjct 429 -ATTGTTTCCTTACATCACTCAGTTTGTCCTTCTAGAATCAAACACGACGTTCACTGGGT 487 Query 662 TGCCTAAACCT-TTG-GTTTTCAATGGGAATCGAG-CGAAGTTCGAGTTTGCT-GAGCCG 717 ||||||| ||| ||| |||| | || | |||| | ||||| ||||| | ||| | Sbjct 488 TGCCTAAGCCTCTTGTGTTTGC--TGCTCACCGAGATG-AGTTCAAGTTT-ATCGAGTC- 542 Query 718 AGGC-TGAGTTATGGGAAC-ATTGCAGGACGATTCAAGAAAGGAG-AAAACCCGTTTGT- 773 | || ||| |||| || || ||| ||| |||| ||||| | | || |||||| | Sbjct 543 ACGCTTGACTTAT-GGTACTGTTGGTGGAAGATTTGTCAAAGG-GCAGAATCCGTTT-TA 599 Query 774 GGAAGAAGCTTACCAGAGGA-TTGCAT-TGGATCAGCTGATCAGACTGGCTGGTA-TAGA 830 ||||| ||||| ||| || | || | | |||||||| | ||| | ||||| | || Sbjct 600 CGAAGAGGCTTATCAG-CGAGTAGC-TCTAGATCAGCTTCTGAGAATCGCTGGGATTA-C 656 Query 831 AGAAGATGATC-TGTTGATAATGTCTGATGTTGATGAGATTCCTAG-CGCTCATACCATC 888 || ||||| | ||||| ||||||||||||||||||||||||| || | || ||||| Sbjct 657 TGATGATGA-CTTGTTGTTAATGTCTGATGTTGATGAGATTCCAAGTAG-ACACACCATT 714 Query 889 AATCTGCTT-AGATGGTGCGATGGATA-CCC-ACCGATTCTTCATCTTCAGTTGAAAAAC 945 || || || || ||||||||| |||| ||| | ||| |||||||| | | | || ||| Sbjct 715 AACCT-TTTAAGGTGGTGCGAT-GATATCCCGA-AGATCCTTCATCTGCGGCTCAAGAAC 771 Query 946 TA-CTTATACTCATTCG-AGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCATC 1003 || ||| ||||| |||| | | ||| ||||| ||||| |||||||||||||| | || | Sbjct 772 TATCTT-TACTCGTTCGAATTCCTT-GTTGATAACAAGAGCTGGAGAGCTTCCGTCCA-C 828 Query 1004 AG-TACAAGCCTGGG-AAGACTCGATACGCTCATT-TC--C-GTC-AAGGCAACACTCTT 1056 || || || | ||| ||||| || || ||||||| || | ||| | | || | || Sbjct 829 AGATATGAGAC-GGGTAAGACACGGTATGCTCATTATCGACAGTCGGATG-AA-A-TC-- 882 Query 1057 TTAGCAGATTCTGGTTGGCATTGCAG-TTTCTGTTTCAGGCACATCAGTGAGTTTATATT 1115 || || ||| | || ||||| || || ||| || ||| | | ||||||||||||||||| Sbjct 883 TTGGCGGATGCAGGATGGCACTGTAGCTTT-TGCTTCCGACGGATCAGTGAGTTTATATT 941 Query 1116 CAAGATGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTC-TCATTATCTA-AACCCA 1173 |||||||||||| || || || ||||| | || || || | ||||| ||| || || Sbjct 942 CAAGATGAAAGCTTATAGCCATAATGATAGAGTGAGGTT-TGGTCATT-TCTTGAATCCT 999 Query 1174 AAAAGAATACAA-GATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGA 1232 || ||| | ||| || || || || |||||| ||||||| |||||||||||||| ||||| Sbjct 1000 AAGAGAGTTCAAAGA-GTTATATGCAAAGGAGCTGATCTTTTCGATATGCTTCCCGAAGA 1058 Query 1233 GTATACGTTCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTAT-TCCGCAG 1291 |||||| |||| ||| || || || ||| | ||||||||||||| |||| | || || | Sbjct 1059 GTATACCTTCAAGGAGATAATAGGAAAAATGGGTCCAATCCCGCATTCTT-TCTCAGCCG 1117 Query 1292 TTCATCTACCAGC-TCATCTGATAGAAAAAGCTGAGA-GTTACAAATACTTGTTACCTGG 1349 ||||||| || | | |||| | ||||| || || | || ||| || | | ||||| || Sbjct 1118 TTCATCTTCCTTCGT-ATCTCCTGGAAAACGCGGATAAGT-ACAGATTCCTCTTACC-GG 1174 Query 1350 GAACT-GCATAAGGGAAA 1366 ||| | ||||||| |||| Sbjct 1175 GAAATTGCATAAGAGAAA 1192 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67076921445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5