BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14490.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893355 jgi|Araly1|893355|Al_scaffold_0006_1351 1435 0.0
Ahg902923 jgi|Araly1|902923|Al_scaffold_0003_51 571 3e-162
> Ahg893355 jgi|Araly1|893355|Al_scaffold_0006_1351
Length=1098
Score = 1435 bits (777), Expect = 0.0
Identities = 968/1057 (92%), Gaps = 25/1057 (2%)
Strand=Plus/Plus
Query 1 ATGAAAACTCTACACAGGACTTGGATAGTGGATGGCCCATGGATCTCAAGGAATGTAAAG 60
||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1 ATGAAAACTTTACACAGGACTTGGATTGTGGATGGTCCATGGATCGCAAGGAATGTAAAG 60
Query 61 AATGCGTCTCTGTCTTCAGCTCTGCAGATTAAAGACTGCGGAGCTTATATCAACTGCTTT 120
||||||||| ||||||||||||||||||||||||| || | |||||||||||||||| |
Sbjct 61 AATGCGTCTGTGTCTTCAGCTCTGCAGATTAAAGATTGTGAAGCTTATATCAACTGCCCT 120
Query 121 AACTGCTCTTACCGCATCGACAACAGCAATGTACTGACTCCATGGCCAGGCCTTCCTAAA 180
||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 AACTGCTATTACCGCGTCGACAACAGAAATTTACTGACTCCATGGCCAGGCCTTCCTAAA 180
Query 181 GGTGTGAAATTCGAGCCAACCGATGAGGAAGTGATTGAGCATTTGGAAGCTAAGTGTGGT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGTGTGAAATTCGAGCCAACCGATGAGGAAGTGATCGAGCATTTGGAAGCTAAGTGTGGT 240
Query 241 ATTGATGGCTTAAAACCACATCTTCTTATCCAAGACTTTATATGTTCAGTCACTCAAGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGATGGCTTAAAACCACATCTTCTTATCCAAGACTTTATATGTTCAGTCACTCAAGAT 300
Query 301 GTTGGTATCAACTACACTCACCCTCAAAACCTTCCAGGTGTGAGTAAAGATGGAACTAGT 360
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 301 GTTGGTATCAACTACACTCACCCTCAAAACCTTCCAGGTGTGAATAAGGATGGAACTAGT 360
Query 361 GTCTTCTTCTTTAACAAGACGGCACATGCATATCAAAATGGGCAGAGAAAGCGGAGAAGG 420
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 361 GTCTTCTTCTTTAACAAGACGGCACATGCATATCAAAATGGTCTGAGAAAGAGGAGAAGG 420
Query 421 ATCACACCAACTAGTCTCAAGGATGA-TACGGTTCGCTGGCACAAGACTGGTCAAACCAA 479
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 421 ATCACACCAACTAGTCTCAAGGATGAAT-CGGTTCGCTGGCACAAGACTGGTCAAACCAA 479
Query 480 ACCGGTGAT-GCTCAATGGAATCCAGAAGGGATGCAAGAAGATCATGGTGCTCTACAAGA 538
||||||||| | |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 480 ACCGGTGATCG-TCAATGGAGTCCAGAAGGGATGCAAGAAGATCATGGTGCTCTATAAGA 538
Query 539 GCGCGAGAAAGGGATTCAAACCCGAGAAATCTAACTGGGTTTTGCACCAGTACCATTTGG 598
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 539 GCGCGAGGAAGGGATTCAAACCTGAGAAATCTAACTGGGTTTTGCACCAGTACCACTTGG 598
Query 599 GAACTGAAGAAGGCGAGATTGGGGAATATGTTGTCTCTAAGATCACATATCAGCAACCAA 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAACAGAAGAAGGCGAGATTGGGGAATATGTTGTCTCTAAGATCACATATCAGCAACCAA 658
Query 659 AGCAACAGGAGAAAACCATCGATGAGAGTGAGAGTTCTGGGGTTCGAGGTGGCCCTAGCA 718
||||| ||||||||| || |||||||||||||||||||||| |||||||||||| | ||
Sbjct 659 AGCAATGGGAGAAAACTATGGATGAGAGTGAGAGTTCTGGGGCTCGAGGTGGCCCAACCA 718
Query 719 CACCGAAAACTAGTACTATTACACAAGTTAGACCTGTGATTTCTGTTGATGAGGATGAAA 778
|||||||||||| |||| |||||||| || ||||||||||||||||||||||||||| |
Sbjct 719 CACCGAAAACTACTACTCCTACACAAGCTAAACCTGTGATTTCTGTTGATGAGGATGACA 778
Query 779 TAGCTTTTGATGATGATTCTAAGATGGTTCTTGATTCATATGCCGAGGGACTGGAGAACA 838
|||||| ||||||| | |||||||||||| |||| ||| ||||||||||||||| ||||
Sbjct 779 TAGCTTATGATGAT-A--CTAAGATGGTTCATGATACATTTGCCGAGGGACTGGATAACA 835
Query 839 TTCAAGAAGCTTCTTCTGGTTCGACATCAGACAAAATAGCTAAAGTGGGAGGGAATGTGA 898
||||||||||||||| |||||| |||||||||| | |||| |||||| ||||||| |||
Sbjct 836 TTCAAGAAGCTTCTTATGGTTCAACATCAGACAGAGGAGCTCAAGTGGCAGGGAATTTGA 895
Query 899 GTGTTATTGAAGATAACTTAATGTCCAAGAAAATTGAAGCTTCGTCGA---TT------- 948
|||| |||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 896 GTGTGATTGAAGATAACTTGGTTTCCAAGAAAATTGAAGCTTCGTCGTCCCTTGTGGAAA 955
Query 949 ----CCT-AATCATGGAAATGTTGAC-TACGGATCAGGAAACTTTTCAGTTTCAGATTTG 1002
||| ||| ||||||||| |||| | |||||| |||||||||||| | ||||||||
Sbjct 956 AGAACCTTAATTATGGAAATGCTGACAT-CGGATCTGGAAACTTTTCAATGACAGATTTG 1014
Query 1003 GAGAATGCAGAATTAGGGACTCTCCCTGATTTACTTT 1039
||||||||||| |||||||||||||||||||| ||||
Sbjct 1015 GAGAATGCAGATTTAGGGACTCTCCCTGATTT-CTTT 1050
> Ahg902923 jgi|Araly1|902923|Al_scaffold_0003_51
Length=1074
Score = 571 bits (309), Expect = 3e-162
Identities = 688/863 (80%), Gaps = 57/863 (7%)
Strand=Plus/Plus
Query 15 CAGGACTTGGATAGTGGATGGCCCATGG-ATCT-CAAGGAATG-TAAAGAATGCGTCTCT 71
|||| ||||||| || ||||||| | || || | ||| || | |||| ||||| |||||
Sbjct 9 CAGGGCTTGGATTGTCGATGGCCGA-GGAAT-TGCAACCAAAGTTAAA-AATGCCTCTCT 65
Query 72 GTCTTCAGCTCTGCAGATTAAAGACTGCGGAGCTTATATCAACTGCTTTAACTGCTCTTA 131
||||||||| ||||||| ||||||| |||||| ||||||| ||| |||||||||||
Sbjct 66 TTCTTCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATCAATTGCCCCAACTGCTCTTA 125
Query 132 CCGCATCGACAACAGCAATGTACTGACTCCATGGCCAGGCCTTCCTAAAGGTGTGAAATT 191
|||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| || ||
Sbjct 126 CCGCATTGACAACAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTT 185
Query 192 CGAGCCAACCGATGAGGA-AGTGATTGAGCATTTGGAAGCTAAGTGTGGTATTGATGGCT 250
|||||| |||||||||| | | || || |||||||||||| ||||| |||| ||||
Sbjct 186 TGAGCCAGCCGATGAGGACA-TTATCGAATTTTTGGAAGCTAAATGTGGGATTGGGGGCT 244
Query 251 -TAAAACCACATCTTCTTATCCAAGACTTTATAT-GTTCAGTCACTCAAGATGTTGGTAT 308
| |||| ||| |||||||| |||| || || | || | |||||| |||||||||| ||
Sbjct 245 CT-GAACCCCATGTTCTTATCGAAGAGTTCAT-TCGTCCTGTCACTGAAGATGTTGGAAT 302
Query 309 CAACTACACTCACCCTCAAAACCTTCCAGGTGTGAGTAAAGATGGAACT-AGTGTCTTCT 367
||| ||||||||||||||||||||||| |||| | |||||||| | | ||||||||||
Sbjct 303 CAATTACACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGG-AGTGAGTGTCTTCT 361
Query 368 TCTTTAACAAGACGGCACATGCATAT-CAAAATGGGCAGA-GAAAGCGGAGAAGGATCAC 425
||||| ||||||| | || |||||| || | || |||| |||| || |||| ||||||
Sbjct 362 TCTTTCACAAGACAGTGCAGGCATATGGAACA-GGACAGAGGAAA-CGCAGAAAGATCAC 419
Query 426 A-CCA-ACTAGTCTCAAGGATGATA-CGGTTCGCTGGCACAAGACTGGTCA-AACCAAAC 481
| ||| ||| | | || ||||| | | ||||| ||||||||||| || || ||||||||
Sbjct 420 ACCCACACT--TGTGAACGATGA-ACCAGTTCGTTGGCACAAGACAGG-CAGAACCAAAC 475
Query 482 CGGTGATGCTCAATGGAATCCAGAA-GGGATGCAAGAAGATCATGGTGCTCTACAAGAGC 540
| ||| ||||||||||| |||| || ||| ||||||||||||||||||||||||||||||
Sbjct 476 CTGTGCTGCTCAATGGAGTCCA-AAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGC 534
Query 541 GCGAGAAAGGGATTCAAACCC-GAGAAATCTAACTGGGTTTTGCACCAGTACCATTTGGG 599
|| |||||||||| | || || |||||||| ||||||||| |||| ||||||||||| ||
Sbjct 535 GCTAGAAAGGGAT-CGAAGCCTGAGAAATCAAACTGGGTTCTGCATCAGTACCATTTAGG 593
Query 600 AACTGAAGAAGGCGAGAT-TGGG-GAATATGTTGTCTCTAAGATCACATATCAGCAACCA 657
||| |||| || ||| | || || |||||||| || ||||||||||||||||| ||
Sbjct 594 AACAGAAG--GGAAAGAAGTAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCCG 651
Query 658 AAGCAACAGGAGAAAA-CCATCGATGAGAG-TGAGAGTTCTGGGGTTCGAGGTGGCCCTA 715
|||| || ||||| || | ||||| || ||||||||| |||||| |||||||||| |
Sbjct 652 AAGCTTG-GG-GAAAATCC-T-GATGA-AGGTGAGAGTTCCGGGGTTAGAGGTGGCCCAA 706
Query 716 GCACACCGAAA-ACTAGTACTATTACACAAGTTAGACCT-GT-GATTTCTGTTGATG-AG 771
| ||||| ||| || | |||| ||| | | ||| ||| || ||| | |||| || ||
Sbjct 707 GAACACC-AAAGACGAATACTCCTACGCCACCTAG-CCTTGTAGATGGC-GTTGCTGGAG 763
Query 772 GATGAA-ATAGCTTTTGATGATGATTCTAAGATGGTTCTTGATTCATATGCCGAGGGACT 830
||||| | ||||||||||||| | | |||||| ||| ||| ||| | ||||||||
Sbjct 764 -ATGAAGA-AGCTTTTGATGAT--T-CAAAGATG-TTC--GATCCATTTTTTGAGGGACT 815
Query 831 GGAGAACATTCAAGAAGCTTCTT 853
|| | ||||| |||||| |||
Sbjct 816 TGACAGCATTCCTGAAGCTGCTT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5