BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14500.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940930 jgi|Araly1|940930|scaffold_601474.1 1535 0.0
> Ahg940930 jgi|Araly1|940930|scaffold_601474.1
Length=963
Score = 1535 bits (831), Expect = 0.0
Identities = 911/949 (96%), Gaps = 7/949 (1%)
Strand=Plus/Plus
Query 115 TCGAGGTTAATTAGGCCCAAATCGATGCCTTTAAATGTAGTCAATGATCGTGATGGCTCT 174
|||||||||| | ||| |||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 1 TCGAGGTTAA--A-GCCAAAATCGATGCCTTTGAATGTAGCCAATGATCGTGATGGTTCT 57
Query 175 TCTCGCATTCTTTTGACCGACCCTGCCGGATCAACTGCTGAGGTGCTTTTGTATGGAGGG 234
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 58 TCTCGCATTCTTTTGACCGACCCTGCCGGTTCAACTGCTGAGGTGCTTTTGTATGG-GGG 116
Query 235 -CAAGTGGTTTCTTGGAAAAACGAAAGGAGAGAGAAGTTGCTTTATATGAGCACCAAGGC 293
|||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 117 ACAAGTGGTTTCTTGGAGAAATGAAAGGAGAGAGCAGTTGCTTTATATGAGCAGCAAGGC 176
Query 294 GCAATTGAAGCCACCAAAGGCGATCAGGGGAGGGTTACCTATCAGCTTTCCACAGTTTGG 353
||||||||| ||||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 177 GCAATTGAAACCACCCAAGGCCATTAGGGGAGGGTTACCTATCTGCTTTCCACAGTTTGG 236
Query 354 AAATTTTGGTGCACTTGAGCGACATGGATTTGCCCGTAACAGATTCTGGTCACTTGATAA 413
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 237 AAATTTTGGTGCACTTGAGCGACATGGATTTGCTCGTAACAGATTCTGGTCATTTGATAA 296
Query 414 TGATCCTTCACCTCTGCCTCCGGCTAACCAGCAATCAACTGTTGATTTAGTATTGAAGTC 473
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGATCCTGCACCTCTGCCGCCGGCTAACCAGCAATCAACTGTTGATTTAGTATTGAAGTC 356
Query 474 TACTGAAGATGATTTGAAGATATGGCCTCATAGCTTTGAACTTCGTGTTCGCATATCTAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TACTGAAGATGATTTGAAGATATGGCCTCATAGCTTTGAACTTCGTGTTCGCATATCTAT 416
Query 534 CAGTCCTGGAAAACTTACAATAATCCCGCGTGTGAGGAACACTGACAC-AAAGGCATTTT 592
|||||||||||||||||| || |||||||||||||||||||||||| | ||||||||| |
Sbjct 417 CAGTCCTGGAAAACTTACTATCATCCCGCGTGTGAGGAACACTGAC-CTAAAGGCATTCT 475
Query 593 CCTTTATGTTTTCACTTCGTAACTACTTATATGTATCCGATATAAGTGAAGTTCGGGTTG 652
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 CCTTTATGTTTTCACTTCGTAACTACTTATATGTATCCGACATAAGTGAAGTTCGGGTTG 535
Query 653 AGGGTCTGGAGACGCTTGATTATCTGGACAACTTGATGCGTAGAGAAAGATTCACGGAGC 712
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 AGGGTCTGGAGACACTTGATTATCTGGACAACTTGATGCGTAGAGAAAGATTCACAGAGC 595
Query 713 AGGCAGATGCAATTACCTTTGACGGCGAGGTTGATAAAGTGTACTTGAACACGCCGACAA 772
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 596 AGGCAGATGCAATTACCTTTGACGGCGAGGTTGATAGAGTGTACTTGAACACGCCGACAA 655
Query 773 AGATTGCCATCATAGATCATGAGAGGAAAAGAACTATCGAGTTGCGAAAGGAAGGCATGC 832
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 AGATTGCCATCATAGATCATGAGAGAAAAAGAACTATCGAGTTGCGAAAGGAAGGCATGC 715
Query 833 CAAATGCAGCTGTGTGGAACCCTTGGGACAAGAAGGCCAAGAGTATTGCAGATATGGGAG 892
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 CAAATGCAGTTGTGTGGAACCCTTGGGATAAGAAGGCCAAGAGTATTGCAGATATGGGAG 775
Query 893 ATGAGGATTACACAACAATGCTGTGTGTAGATTCTGGTGCTATAGAAAGCCCAATTGTGT 952
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 ATGAGGATTACACAACAATGCTGTGTGTAGATTCTGGTGCTATAGAAACCCCAATTGTGT 835
Query 953 TGAAGCCACATGAAGAGTGGAAAGGAAGACAAGAACTCTCTATCGTCTCCTCAAGCTACT 1012
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 836 TGAAGCCACATGAAGAGTGGAGAGGGAGACAAGAACTCTCTATCGTCTCCTCAAGCTACT 895
Query 1013 GCAGCGGTCAGCTCGATCCACGTAAGGTTCTTTATGGGGATTACTGATA 1061
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCAGCGGTCAGCTCGATCCACGTAAGGTTCTTTATGGGGATTACTGATA 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5