BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14510.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488292 jgi|Araly1|488292|fgenesh2_kg.6__1426__AT5G14510.1 1744 0.0
> Ahg488292 jgi|Araly1|488292|fgenesh2_kg.6__1426__AT5G14510.1
Length=1082
Score = 1744 bits (944), Expect = 0.0
Identities = 1039/1085 (96%), Gaps = 5/1085 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGATTGTGGTAGAGAGTCTTCTTAGCGGTAACAGAGAGTCTCAAATAGAAGCA 60
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 ATGGAGGAGATTGTGGTGGAGAGTCTTCTTAGCGGCAACAGAGAGGCTCAAATAGAAGCA 60
Query 61 GCTATAGAGCTGACTAATCTAAGCAGGAAGCAAAGACAAAAATTGGCAGAAAGAGAGATC 120
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTATCGAGCTGAGTAATCTAAGCAGGAAGCAAAGACAAAAATTGGCAGAAAGAGAGATC 120
Query 121 ATTTCTCCTTTGCTCTCGATGTTACAATCTCAAGACTGTATCACAACAGAGGTTGCTCTA 180
||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 121 ATTTCTCCTTTACTCTCAATGTTACAATCTCAAGACTGTCTCACAACAGAAGTTGCTCTA 180
Query 181 TCTGCATTACTCAGCCTTGCCTTTGGCAGTGAAAGGAACAAAGTCCGAATTGTGAAATCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TCTGCATTACTCAGCCTTGCCTTTGGCAGTGAAAGGAACAAAGTCCGAATCGTGAAATCT 240
Query 241 GGCGCAGTACCAACGTTGCTAGAAATTCTCCAGTCAGAAACGAAGATGGTAGTTCTTGAA 300
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GGCGCAGTACCAATGTTGCTAGAAATCCTCCAGTCAGAAACGAAGATGGTAGTTCTTGAA 300
Query 301 TTGGCCATGGCATTTCTTCTGATTCTCTCTTCCTGCAACAAAAACAAGGTTAAGATGGCA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTGGCCATGGCATTTCTTCTGATTCTCTCTTCCTGTAACAAAAACAAGGTTAAGATGGCA 360
Query 361 TCAACCAGGTTGGTTCAGCTTTTAGTTGGACTTATTGGGCTCGATAGACTTACCATCCAG 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 361 TCAACCAGGTTGATTCAGCTTTTAGTTGGACTTATTGGGCTCGATAGACTTACCGTTCAG 420
Query 421 GCCAAGGTTGATGGCATAGCAACACTACAAAATCTATCTACTCTCCATCAGATTGTTCCC 480
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GCCAAGGTTGATGCCATAGCAACACTACAAAATCTATCGACTCTCCATCAGATTGTTCCC 480
Query 481 CTGGTTATAGCTTCGGGAGCACCATATGCTTTGCTTCAAGTCATCAACTTTTGCGATAAA 540
||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||
Sbjct 481 CTGGTTATAGCTTCGGGAGCACCGTATGCTTTGCTTCAAGTCATCAACTGTAGTGATAAA 540
Query 541 TCTTCCGAATTGGCTGATAAGGCAGTAGCTTTGCTTGAAAACATAATTTCTCATTCACCA 600
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TCTTCTGAATTGGCTGATAAGGCAGTAGCTTTGCTTGAAAACATAACTTCTCATTCACCA 600
Query 601 GAATCTGTTTCCAGCATCGGTGGAGCAATTGGGGTTCTGGTGGAAGCCATTGAAGAAGGG 660
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 GAATCTGTTTCCAGCATCGGTGGAGCAATTAGGGTTCTGGTGGAAGCCATCGAAGAAGGG 660
Query 661 TCAGCACAGTGTAAAGAGCATGCCGTGGGAATACTACTTGGTATATGCAACAACGACAGA 720
||||| |||||||||||||| | ||| |||||| |||||||| |||||||||||||||||
Sbjct 661 TCAGCCCAGTGTAAAGAGCACGGCGTAGGAATATTACTTGGTGTATGCAACAACGACAGA 720
Query 721 GAGACAAACCGAGGAATGATACTTAGAGAAGGAGTGATGCCTGGATTGCTTCAAGTGAGC 780
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 721 GAGACAAACCGAGGAATGATACTGAGAGAAGGAGTGATGCCCGGATTGCTTCAAGTGAGC 780
Query 781 GTAGACGGGACACGGAGGGCTAAAGAAATGGCTAGAGAGCTACTGCTACTACTAAGGGAC 840
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 GTAGACGGGACACGGAGGGCTAAAGAAATGGCTAGAGAGCTATTGCTACTACTAAGGGAC 840
Query 841 TGCTCTGGCTATGTCATCAAAAACAAACAGTCAAAGATTGAGATTGTTGAGCAAATTATG 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TGCTCTGGCTATGTCATCAAAAACAAACAGTCAAAGATTGAGATTGTAGAGCAAATTATG 900
Query 901 CGGGAGATTGATCAAGAAGGAGAGCGAATACCTGGAACCATGTTGAAGTTGGTAGAAGAG 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 CGGGAGATTGATCAAGAAGGAGAGCGAATACCCGGAACCATGTTGAAGTTGGTAGAAGAG 960
Query 961 ATGATTTCCAAACTCAGCACATAACCCCCTGGTTGCATTCCAGATCTTGTATATATAAAA 1020
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 961 ATGATTTCCAAACTCAGCACATAGCCT--TGGTTGCATCCCAGATCTTGTATATATAAAA 1018
Query 1021 CCATGTACTGTTTCACAGAAAGAGAGACTTCTTCTTAGGAATAATTGTTACCACCATCTT 1080
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1019 CCATGTACTGTTTCACAGAAAGAGAGCCTTCTTCTTAGGAATAATTGTTACCA---TCTT 1075
Query 1081 ATTGC 1085
|||||
Sbjct 1076 ATTGC 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5