BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14520.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325922 jgi|Araly1|325922|fgenesh1_pm.C_scaffold_6001142 2691 0.0
> Ahg325922 jgi|Araly1|325922|fgenesh1_pm.C_scaffold_6001142
Length=1764
Score = 2691 bits (1457), Expect = 0.0
Identities = 1666/1768 (94%), Gaps = 9/1768 (1%)
Strand=Plus/Plus
Query 75 ATGCCGAAGCATTACAGACCAACGGGGAAAAAGAAGGAAGGAAATGCGGCTAGGTATATG 134
|||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGAAGCATTATAGGCCAGCGGGAAAAAAGAAGGAAGGAAATGCGGCTAGGTATATG 60
Query 135 ACCAGGTCGCAAGCTCTTAAACATCTTCAAGTTAACTTGAATCTATTCAGGAGACTATGT 194
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ACCAGGTCGCAAGCTCTCAAACATCTTCAAGTTAATTTGAATCTATTCAGGAGACTATGT 120
Query 195 ATTGTCAAAGGTATATTTCCCCGAGAACCAAAGAAGAAGATTAAGGGAAACCATCACACT 254
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 121 ATTGTCAAAGGTATATTTCCCCGAGAACCCAAGAAGAAGGTGAAGGGAAACCATCACACT 180
Query 255 TACTACCATGTCAAGGACATTGCTTTCCTCATGCACGAGCCTCTTCTTGAGAAGTTTAGG 314
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 TACTACCATGTCAAGGACATTGCTTTCCTCATGCACGAGCCACTTCTTGAGAAGTTCAGG 240
Query 315 GaaatcaaaacataccaaaagaaggtcaaaaaagccaaggccaagaaaaaCGAGGAGCTT 374
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GAAATCAAAACATATCAAAAGAAGGTCAAAAAAGCCAAGGCTAAGAAAAACGAGGAGCTC 300
Query 375 GCACGCCTTCTGCTCACCCGCCAACCTACTTACAAGCTTGATAGATTGATCCGTGAGAGG 434
||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 301 GCACGCCTTTTGCTTACTCGCCAACCCACTTACAAGCTAGATAGATTGATCCGTGAAAGG 360
Query 435 TATCCAACATTTATTGATGCACTGCGAGACTTGGATGACTGTCTCACTATGGTTCATCTT 494
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 361 TATCCAACATTTATTGATGCACTACGAGACTTGGATGACTGTCTTACGATGGTTCATCTT 420
Query 495 TTTGCGGTGTTACCTGCATCAGACAGGGAAAATCTTGAAGTTAAGCGAGTCCACAACTGT 554
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 TTTGCGGTGTTACCTGCATCAGACAGGGAAAATCTTGAAGTTAAGAGAGTCCACAACTGT 480
Query 555 CGAAGATTGACCCATGAATGGCAAGCTTACATTTCACGTTCTCATGCGTTACGTAAAGTG 614
||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 481 AGAAGATTGACCCATGAATGGCAAGCATACATTTCACGTTGTCATGCATTACGTAAAGTG 540
Query 615 TTTGTGTCTGTCAAGGGTATTTACTATCAGGCTGAAATAGAAGGTCAAAAGATCACTTGG 674
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TTTGTGTCTGTCAAGGGTATTTACTATCAGGCTGAATTAGAAGGTCAAAAGATCACTTGG 600
Query 675 TTGACCCCTCATGCAATCCAACAAGTTTTTACAAATGATGTTGACTTTGGTGTCCTGCTT 734
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGACCCCTCATGCAATTCAACAAGTTTTTACAAATGATGTTGACTTTGGTGTCCTGCTT 660
Query 735 ACCTTCTTGGAATTTTACGAGACTCTTCTTGCCTTTATTAACTTCAAGCTTTACCATTCT 794
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 661 ACCTTCTTGGAATTTTATGAGACTCTCCTTGCCTTTATTAACTTCAAACTTTACCATTCT 720
Query 795 CTGAATGTTAAATACCCGCCAATCCTTGACTCTCGGTTGGAGGCTTTGGCTGCAGATCTC 854
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CTGAATGTGAAATATCCGCCAATCCTTGATTCTCGGTTGGAGGCTTTGGCTGCAGATCTC 780
Query 855 TATGCACTGTCTAGATACATAGATGCCAGCTCCAGAGGCATGGCGGTGGAACCCAAAGTT 914
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 781 TATGCACTGTCAAGATACATAGATGCCAGCTCCAGAGGCATGGCGGTGGAACCTAAGGTT 840
Query 915 GATGCTTCATTTAGCTCACAGTCAAATGACCGTGAAGAGTCTGAACTTAGACTTGCACAG 974
|| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 GAAGCTTCATCTAGCTCACAGTCAAATGACCGTGAAGAGTCTGAACTGAGACTTGCACAA 900
Query 975 CTTCAGCACCAGCTGCCTTCAAGTGAGCCTGGAGCATTGATGCATCTGGTTGCAGATAAC 1034
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 901 CTTCAGCACCAGCTGCCTTCGAGTGAGCCTGGAGCATTGATGCATCTTGTTGCAGATAAC 960
Query 1035 AATAAAGAGGTTGAAGAGGATGAAGAAACAAGAGTGTGCAAGTCACTCTTCAAGGATCTG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATAAAGAGGTTGAAGAGGATGAAGAAACAAGAGTGTGCAAGTCACTCTTCAAGGATCTG 1020
Query 1095 AAGTTTTTCTTGAGCCGTGAGGTTCCAAGAGAGTCCCTGCAATTGGTGATTACTGCTTTT 1154
|||||||||||||||||||||||||| ||||||||||||| || ||| || ||||||||
Sbjct 1021 AAGTTTTTCTTGAGCCGTGAGGTTCCGAGAGAGTCCCTGCTTTTTGTGCTTCCTGCTTTT 1080
Query 1155 GGTGGGATGGTGTCTTGGGAAGGAGAAGGTGCACCTTTCAAGGAGGATGATGAGAGTATT 1214
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 GGTGGGATGGTGTCTTGGGAAGGAGAAGGTGCACCATTCAAGGAGGATGATGAGAGTATT 1140
Query 1215 ACACATCATATCATCGATAAGCCAAGCGCTGGCCATTTGTACCTTTCTAGGGTATATGTG 1274
||||||||||||||||||||||||||||| |||||| |||| ||||| ||||| ||||||
Sbjct 1141 ACACATCATATCATCGATAAGCCAAGCGCAGGCCATGTGTATCTTTCAAGGGTGTATGTG 1200
Query 1275 CAACCACAGTGGATCTATGACTGTGTGAATGCTCGCATAATCTTGCCAACTGAAAAGTAC 1334
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 CAACCACAGTGGATCTATGACTGTGTGAATGCTCGCATAATCTTGCCGACTGAAAAGTAC 1260
Query 1335 TTGGTCGGAAG-A-A-TTCCACCGCCACACTTGTCACCATTTGTGGACAATGAAGCAGAA 1391
||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTGGTTGGAAGCAGAATTCCACCGCCACACTTGTCACCATTTGTGGACAATGAAGCAGAA 1320
Query 1392 GGATACGTTCCTGATTATGCCGAAACCATCAAAAGACTACAGGCAGCAGCAAGAAACGAA 1451
||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 1321 GGATATGTTCCTGATTATGCTGAAACCATCAAAAGACTACAAGCAGCAGCCAGAAACGAA 1380
Query 1452 GTGCTTCCATTGCCAGGTGTTGGGAAAGAGGATCTTGAAGATCCTCAAAATTTATTGTAC 1511
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 GTTCTTCCGTTGCCAGGTGTTGGGAAAGAGGATCTTGAAGATCCTCAAAACTTATTGTAC 1440
Query 1512 GCTGGTGTTATGAGTCGTGCGGAGGAAGCCGAAGCTGCAAAGAACAAGAAGAAGATGGCG 1571
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCTGGTGTTATGAGTCGTGCTGAGGAAGCCGAAGCTGCAAAGAACAAGAAGAAGATGGCG 1500
Query 1572 GCGCAGGAGAAGCAATACCATGAGGAACTGAAGATGGAAATAAATGGAAGTAAGGATGTT 1631
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1501 GCGCAGGAGAAACAATACCATGAGGAACTGAAGATGGAAATAACTGCAAGTAAGGATGTT 1560
Query 1632 GTAGCGCCTGTGTTGGCTGAAGGTGAGGGTGAAGAATCAGTTCCGGATGCTATGCAAATA 1691
||||| |||||| || |||||| | ||||||||||||||| |||||||||||||||
Sbjct 1561 GTAGCACCTGTGGTGACTGAAG---A---TGAAGAATCAGTTCCTGATGCTATGCAAATA 1614
Query 1692 GCTCAAGAGGACGCTGATATGCCCAAAGTGTTGATGTCCCGTAAGAAGAGGAAGCTCTAC 1751
||||||||| | ||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 1615 GCTCAAGAGAATGCTGATATGAACACAGTGCTGATGTCCCGTAAGAAGAGGAAGCTCTAC 1674
Query 1752 GATGCCATGAAGATTTCGCAGTCAAGGAAGAGATCAGGTGTTGAAATAATCGAGCAGCGC 1811
|| |||||||||||| |||| || ||||| | || |||||||| ||||||||||||||
Sbjct 1675 GAAGCCATGAAGATTGGGCAGAAAAAGAAGAAAGCAAGTGTTGAACTAATCGAGCAGCGC 1734
Query 1812 AAGAAAAGGTTGAATGATACTCAACCAT 1839
||||||| |||||||||| ||||| |||
Sbjct 1735 AAGAAAAAGTTGAATGATGCTCAATCAT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5