BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14530.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488294 jgi|Araly1|488294|fgenesh2_kg.6__1428__AT5G14530.1 1670 0.0
> Ahg488294 jgi|Araly1|488294|fgenesh2_kg.6__1428__AT5G14530.1
Length=1104
Score = 1670 bits (904), Expect = 0.0
Identities = 1014/1066 (95%), Gaps = 11/1066 (1%)
Strand=Plus/Plus
Query 11 TTTTCTCGTGCTTCACTGATAATCCAGCTTGACGATGTCGTTGACGGAGCTAGACGACGG 70
||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1 TTTTCTCTTGCTTCACTGTTAATCGAGCTTGACGATGTCTTTGACGGAGCTAGACGACGG 60
Query 71 ACTGGTTCGCAGGATGGCCATGGGCGCAGTCTTCTCTGATTTTGGAGGGAAGATACATTC 130
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 ACTGGTGCGCAGGATGGCCATCGGCGCAGTCTTCTCTGATTTCGGAGGGAAGATACATTC 120
Query 131 GGTGGGTTTCCATAGGACTGATGATCTATTGGTCACATCCAGCGAAGATGATTCACTTCG 190
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GGTGGGTTTCCATAGGACTGATGATCTATTGGTTACATCCAGCGAAGATGATTCACTTCG 180
Query 191 CCTCTTCGATATCGCCAACGCTAAACAGCTGAAGATTACATACCATAAGAAACATGGCAC 250
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 181 TCTCTTCGATATCGCCAACGCTAAACAGCTCAAGATTACATACCATAAGAAACATGGAAC 240
Query 251 CGATCGTGTATGCTTTACCCATCATCCTAGCTCTCTAATTTGCTCTTCTCGATACAATTT 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 CGATCGTGTATGCTTTACCCATCATCCCAGCTCTCTAATTTGCTCTTCTCGATACAATTT 300
Query 311 GGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAATCGGATCCTACGCTA 370
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 301 GGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAACCGGATCCTTCGCTA 360
Query 371 CTTTAAAGGGCATAAAGACAGGGTTGTATCACTTTGTATGTCTCCTATAAATGATAGCTT 430
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 361 CTTTAAAGGGCATAAAGACAGGGTTGTATCGCTTTGTATGTCTCCTATTAATGATAGCTT 420
Query 431 CATGTCTGGTTCTCTCGACCGAAGTGTTAGACTCTGGGATCTTCGTGTAAATGCCTGCCA 490
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 CATGTCTGGTTCTCTCGACCGAAGTGTCAGACTCTGGGATCTTCGTGTAAATGCCTGCCA 480
Query 491 GGGAATTCTACATCTACGTGGTAGACCTGCAGTTGCGTATGACCAACAAGGCCTTGTGTT 550
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 481 GGGAATTCTACATCTACGAGGTAGGCCTGCAGTTGCGTATGACCAACAAGGCCTCGTGTT 540
Query 551 TGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCAGGTGTTATGACAAGGG 610
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCCGGTGTTATGACAAGGG 600
Query 611 TCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATAAAATTCAG 670
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 TCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATCAAATTCAG 660
Query 671 CAACGATGGGAAATCCATGCTCCTAACGACTACAAATAACAATATCTACGTTCTTGATGC 730
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 TAACGATGGAAAATCCATGCTCCTAACGACTACAAATAATAATATCTACGTTCTTGATGC 720
Query 731 ATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACACCCATAGA 790
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 721 ATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCATCACAGGGCACACCCATAGA 780
Query 791 GGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGTTCAGGTGATGGAACCTTACA 850
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 AGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGATCAGGTGATGGAACCTTACA 840
Query 851 TGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGT 900
Query 911 GTCGTGTCTGAAATGGGCACCACGTAGAGCCATGTTCGTTGCTGCTTCTACGGTTCTCAC 970
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 901 GTCATGTCTGAAATGGGCACCTCGTAGAGCCATGTTCGTTGCAGCTTCTACGGTTCTCAC 960
Query 971 ATTCTGGATCCCAAACGACGGTGAATCACCAGCCCCCGCCGATCCTCCTACCGATCAACA 1030
|||||||||||| ||||||||||| ||||||||||||| |||||| || |||| |||||
Sbjct 961 ATTCTGGATCCCCAACGACGGTGAGGCACCAGCCCCCGCGGATCCTGCTGCCGACCAACA 1020
Query 1031 A-C--------AGTGACGACATATAT--GTTTCCATTATGCACTTG 1065
| | |||||| |||||||| ||||||||||| ||||||
Sbjct 1021 AGCTCTTTCTCAGTGACAACATATATATGTTTCCATTATTCACTTG 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5