BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14540.1
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893360 jgi|Araly1|893360|Al_scaffold_0006_1356 2012 0.0
> Ahg893360 jgi|Araly1|893360|Al_scaffold_0006_1356
Length=1332
Score = 2012 bits (1089), Expect = 0.0
Identities = 1257/1336 (94%), Gaps = 19/1336 (1%)
Strand=Plus/Plus
Query 73 AAT-CGGCCCTGTTCTCGGATAAGCAGATAATGGATCTCATGAACGACAACAGCAACAAT 131
||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| |||
Sbjct 4 AATACGGCTCTGTTCTCGGATAAGCAGATAATGGATCTCATGAACGAC-A-A-CAATAAT 60
Query 132 TCACAAGACGGCG---ATCATCAGAA-CTACCGTGTCGGCGATAATGGATTGGAATCGAA 187
||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 61 TCAGAAGACGGCGATCATCATCAGAAGC-ACCGTGTCGGCGATAATGGATTGGAATCGAA 119
Query 188 GAAGGAAGCTATCTTCCCTAGCTATGATTTCCAACCTATGCGCCCTAATGCCTCCGCCGG 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 120 CAAGGAAGCTATCTTCCCTAGCTATGATTTCCAACCTATCCGCCCTAATGCCTCCGTCGG 179
Query 248 ATTGTCTCACCACGCTTTAGATCTCGCCGGATCTGTTAATTCCACGGCTGCTAGGGTTTG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTGTCTCACCACGCTTTAGATCTCGCCGGATCTGTTAATTCCACGGCTGCTAGGGTTTG 239
Query 308 GGATGCGTCTGATCCTAAACCGGTTTCAGCTTCTTCCGCAAGAAGTTATGGCTCTATGGA 367
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GGATGCGTCTGATCCTAAACCGGTTTCAGCTTCTTCCGCAAGAAGTTATGGTTCTATGGA 299
Query 368 CTCTCTCGAACCTTCAAAGTTGTTTGCTGAGAAGGATCGAAATTCCCCCGAGTCAGCGAT 427
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 300 CTCTCTTGAACCTTCAAAGTTGTCTGCTGAGAAGGATCGAAATTCCCCTGAGTCAGCGAT 359
Query 428 TATATCTGCGATCGATCGGACAATGAAGGCCCATGCTGATAAATTGTTACATGTTATGGA 487
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 360 TATATCTGCGATCGATCGGACAATGAAGGCACATGCTGATAGCTTGTTACATGTTATGGA 419
Query 488 AGGTGTCAGTGCACGTCTAACGCAGCTGGAGACCAGAACCCGAGATCTCGAGAATTTGGT 547
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 420 AGGTGTCAGTGCACGTCTAACGCAGCTGGAGACCAGAACCCGAAATCTCGAGAACCTGGT 479
Query 548 TGATGATGTGAAAGTTTCTGTTGGGAACAGTCATGGAAAAACTGATGGTAAATTGAGACA 607
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TGATGATGTCAAAGTTTCTGTTGGGAACAGTCATGGAAAAACTGATGGGAAGTTGAGACA 539
Query 608 GCTTGAAAACATCATGTTAGAGGTGCAAAACGGTGTACAGTTGTTGAAGGACAAACAAGA 667
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GCTTGAAAACATCATGTTAGAGGTGCAAAGCGGTGTACAGTTGTTGAAGGACAAACAAGA 599
Query 668 AATAGTTGAGGCGCAGCTTCAACTTTCAAAGCTCCAGTTATCAAAGGTAAACCAGCAGCC 727
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATAGTTGAAGCACAGCTTCAGCTTTCAAAGCTCCAGTTATCAAAGGTAAACCAGCAGCC 659
Query 728 GGAGACACACTCTACACATGTTGAACCCACTGCTCAGCCGCCTGCATCTCTGCCTCAGCC 787
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 660 CGAGACACACTCTACACATGTTGAACCCACTGCTCAGCCTCCCGCATCACTGCCTCAGCC 719
Query 788 ACCAGCTTCTGCTGCAGCTCCCCCGTCTCTTACTCAGCAGGGCCTCCCACCACAACAATT 847
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 720 ACCAGCTTCTGCTGCAGCTCCCCCATCTCTTACTCAGCAGGGCCTCCCGCCACATCAATT 779
Query 848 TATCCAACCG-CCTGCCTCACAGCACGGTCTCTCACCACCTTCAT-TACAACTGCCTCAG 905
|||||||||| || |||||||||||| ||||| | |||||||||| | |||||| |||||
Sbjct 780 TATCCAACCGACC-GCCTCACAGCACAGTCTCCCGCCACCTTCATCT-CAACTGTCTCAG 837
Query 906 CTTCCTAACCAGTTCTCTCCCCAACAAGAGCCTTATTTCCCTCCGTCTGGTCAGTCCCAG 965
||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 838 CTTCCTAGCCAGTTCTCTCCCCAGCAAGATCCTTATTTCCCTCCACCTGGTCAGTCCCAG 897
Query 966 CCACCTCCAACAATCCAGCCTCCTTATCAACCTCCTCCACCAACCCAGTCATTGCATCAA 1025
||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 898 CCACCTCCAACAAACCAGCCTCCTTATCAACCTCCTCCTCCAACCCAGTCACTGCATCAA 957
Query 1026 CCCCCTTACCAGCCACCTCCTCAACAGCCACAATACCCGCAACAGCCGCCTCCTCAGCTC 1085
|| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 958 CCACCTTACCAGTCACCTCCTCAACAGCCACAATACCCACAACAGCCACCTCCTCAGCTC 1017
Query 1086 CAACACCCGTCAGGCTACAACCCGGAGGAACCACCTTACCCTCAGCAATCTTACCCGCCA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAACACCCGTCAGGCTACAACCCGGAGGAACCACCTTACCCTCAGCAATCTTACCCGCCA 1077
Query 1146 AACCCTCCTCGTCAACCACCTTCTCATCCACCTCCAGGTTCTGCCCCATCTCAACAGTAC 1205
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1078 AACCCTCCTCGTCAACCACCTTCTCATCCACCTCCTGGTTCCGCCCCATCTCAACAGTAC 1137
Query 1206 TACAACGCTCCTCCAACGCCACCATCAATGTATGATGGACCAGGCGGCAGATCCAATTCA 1265
||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1138 TACAACGGTCCTCCAACACCACCATCAATGTACGATGGATCAGGCGGCAGATCCAATTCA 1197
Query 1266 GGTTTTCCTTCCGGATATTCTCCTGAATCATACCCGTATACCGGGCCACCTTC---ACAG 1322
||||| |||||||| ||||| |||||| | ||||||||||| ||||||||||| ||||
Sbjct 1198 GGTTTCCCTTCCGGGTATTCCCCTGAACCGTACCCGTATACTGGGCCACCTTCCTCACAG 1257
Query 1323 TATGGAAACACCCCA-TCTGTGAAACCCACACATCAGAGTGGAAGTGGATCTGGTGCCT- 1380
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1258 TATGGAAACACCCCAATCTGTGAAACCGACACATCAGAGTGGAAGTGGATCTGGTGCCTT 1317
Query 1381 ACCCACAGCTCCCAAT 1396
||| |||||| |||||
Sbjct 1318 ACC-ACAGCTTCCAAT 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5