BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14570.1
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350602 jgi|Araly1|350602|fgenesh1_pg.C_scaffold_6001195 2152 0.0
> Ahg350602 jgi|Araly1|350602|fgenesh1_pg.C_scaffold_6001195
Length=1473
Score = 2152 bits (1165), Expect = 0.0
Identities = 1381/1485 (93%), Gaps = 15/1485 (1%)
Strand=Plus/Plus
Query 189 ATGGAGCCATCTCAACGCAACACCAAACCGCCGTCGTTTTCAGATTCCACTATCCCGGTT 248
||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||| ||
Sbjct 1 ATGGAGCCATCTCAAGGCAACACTAAAACGCCGTCGTTTCCAGATTCCACTATCCCTGTG 60
Query 249 GATTCCGATGGTCGAGCCACCGTCTTCCGACCATTCTCTCTCTCCTCGCCACACTCACGA 308
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 61 GATTCCGATGGCCGAGCCACCGTCTTCCGACCATTTTCTCTCTCCTCGCCGCACTCACGA 120
Query 309 GCCTTTCACCTAGCTTGGCTCTCACTCTTCTCATGCTTCTTCTCCACCTTCTCCATCCCT 368
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GCCTTTCACCTAGCGTGGCTCTCACTCTTCTCATGCTTCTTCTCTACCTTCTCCATCCCT 180
Query 369 CCTCTGGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 428
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACTCGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 240
Query 429 GGAATCGCTTCCTTCGCTGGCTCCATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 488
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAATCGCCTCCTTCGCTGGCTCTATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 300
Query 489 CTCATCGGACCACGTACTTCCTCAGCGATTCTCTCTTTTCTCACCGCTCCTGTAATCCTC 548
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CTCATCGGACCACGGACTTCCTCAGCGATTCTCTCTTTCCTCACCGCTCCTGTAATCCTC 360
Query 549 TCCGCCTCACTCGTCTCCTCTCCGACGTCCTTCATCCTCGTCCGTTTCTTCGTCGGCTTC 608
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TCCGCCTCACTCGTCTCCTCCCCGACGTCCTTCATACTCGTCCGTTTCTTCGTCGGCTTC 420
Query 609 TCGCTCGCTAATTTCGTAGCCAATCAATACTGGATGTCCTCCATGTTCTCCGGTAACGTC 668
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 421 TCTCTCGCTAATTTCGTAGCTAATCAATACTGGATGTCCTCCATGTTCTCTGGCAACGTC 480
Query 669 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 540
Query 729 CTCCTTATGCCTCTCATATACTCCACCATAGCCGAATTCCTTCC-ACGCGCCGTCGCCTG 787
|| |||||||||||||||||| | ||||| ||||||||| | || |||| || |||||||
Sbjct 541 CTACTTATGCCTCTCATATACGCAACCATCGCCGAATTC-TCCCCACGCTCCATCGCCTG 599
Query 788 GCGCGTGTCCTTCGTATTTCCCGCCATTTTTCAGGTTACAACGGCCGTCCTCGTTCTCCT 847
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 GCGCGTGTCATTCGTCTTTCCCGCCATTTTTCAGGTTACAACCGCCGTCCTCGTTCTCCT 659
Query 848 CTACGGCCAAGATACTCCCCACGGTAACAGAAAAAACTCGAACCAGAACAAACTCACAAT 907
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 660 CTACGGCCAAGATACTCCCAACGGTAACAGAAAAAACTCGAACCAGAACAAAATCATAAA 719
Query 908 TCCTGAAGAAGAAGAAGTACTAGTAGTTGAAGAAGACGAACGTTCCAGTTTCGTCGAGAT 967
|||||||||||||| | || ||||| | |||||| |||||||||||||| ||||||||
Sbjct 720 TCCTGAAGAAGAAGTATTAGTAGTACAAGGAGAAGAAGAACGTTCCAGTTTTGTCGAGAT 779
Query 968 CCTAATCGGCGGACTTGGAAATTACAGAGCGTGGATCTTAGCGCTGCTCTACGGATACTC 1027
||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 780 CCTTATCGGCGGACTTGGAAATTACAGAGCGTGGATCCTGGCGCTTCTCTACGGATACTC 839
Query 1028 GTACGGCGTCGAGCTAACGACGGACAACGTGATCGCCGGATATTTCTACGAGAGATTTGG 1087
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 840 GTACGGCGTTGAGCTCACGACGGACAACGTTATCGCCGGATATTTCTACGAGAGATTCGG 899
Query 1088 AGTGAATCTGGAGGCGGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATTGCGTC 1147
|||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 CGTGAATTTAGAGGCAGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATAGCGTC 959
Query 1148 GCGACCGGCGGGAGGGATGATATCGGATGCGCTGGGGAAGAGATTCGGTATGAGAGGGAG 1207
||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 960 GCGACCGGCGGGAGGGATGATATCGGACGCGCTGGGAAAAAGATTCGGGATGAGAGGGAG 1019
Query 1208 GCTGTGGGGGCTATGGATCGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1267
||| ||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTCTGGGGACTGTGGGTGGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1079
Query 1268 AGTCAACTCGCTCTGGGGATCAATC-CTCGTCATGTGGGTCTTCTCTGTTTTCGTTCAAG 1326
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 1080 AGTCAACTCGCTCTGGGGATCAATCGC-CGTCATGTGGGTCTTCTCTGTTTTTGTTCAAG 1138
Query 1327 CTGCTTCTGGCCTTGTATTTGGCGTGGTCCCTTTCGTCTCCACGCGATCGTTAGGAGTGG 1386
||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1139 CTGCTTCTGGCCTCGTATTTGGCGTGGTCCCTTTCGTCTCCACGAGATCTTTAGGAGTCG 1198
Query 1387 TGGCGGGAATTACGGGAAGCGGCGGTACGGTTGGTGCGGTGGTGACGCAGTTTCTGTTGT 1446
||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct 1199 TGGCGGGAATTACGGGAAGCGGCGGCACTGTAGGTGCGGTGGTCACGCAGTTTCTGTTGT 1258
Query 1447 TTTCCGGTGATGATGTTCGAAAACAGAGAAGCATTTCACTTATGGGTTTGATGACTTTTG 1506
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCCGGCGATGGTGTTCGAAAACAGAGAAGCATTTCACTTATGGGTTTGATGACTTTTG 1318
Query 1507 TGTTTGCTCTTTCTGTTACATCAATTTACTTTCCACAATGGGGTGGAATGTGTTGTGGGC 1566
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGTTTTCTCTGTCTGTTACATCTATTTACTTTCCACAATGGGGTGGAATGTGTTGTGGGC 1378
Query 1567 CTTCGTCATCTTCCGAAGAAGAAGATATT-TCTCGGGGACTCCTTGTAGAAGACGAAGAT 1625
|||| | |||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1379 CTTC--C-------GAAGAAGAAGAT-TTATCTCGGCGACTCCTTGTAGAAGACGAAGAG 1428
Query 1626 GAAGAAGGTAAAGTGGTTAGTGGTAGTCTACGTCCCGTTTGTTGA 1670
||||| | ||||||| ||||||||| ||||||||||||||||||
Sbjct 1429 GAAGACGATAAAGTGACTAGTGGTAGACTACGTCCCGTTTGTTGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5