BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14580.1
Length=3419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488299 jgi|Araly1|488299|fgenesh2_kg.6__1433__AT5G14580.1 5084 0.0
> Ahg488299 jgi|Araly1|488299|fgenesh2_kg.6__1433__AT5G14580.1
Length=3401
Score = 5084 bits (2753), Expect = 0.0
Identities = 3220/3439 (94%), Gaps = 58/3439 (2%)
Strand=Plus/Plus
Query 1 GGTGCGTTAAACCCTTTTCCGTtct-cat---tc-c-ctctct--t-ctccgcatctctc 51
|||||||||||||| || ||||||| | | || | |||||| | |||| |||||| |
Sbjct 1 GGTGCGTTAAACCC-TTCCCGTTCTCCTTCCCTCTCTCTCTCTACTACTCCACATCTCCC 59
Query 52 actctctctGTGTATGTGTGATGTCATCGATTGTGAATCGAGCTAGTTCAGCTTCTCTTC 111
||||||||||||||||| | |||||||||||||||||||||||||| ||| | |||||||
Sbjct 60 ACTCTCTCTGTGTATGTATAATGTCATCGATTGTGAATCGAGCTAGGTCAACATCTCTTC 119
Query 112 CTAATTTCCTCGCATGGCGTGCTCTGGGGTTTCGCACCATCTGCTCCGGCCGCCTTGGTT 171
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 120 CTAATTTCCTCGCATGGCGTGCTTTGGGTTTTCGCACCATCTGCTCCGGCCGCCTTGGTT 179
Query 172 TCGCTCCGTCTGTTCCAGACTCGCCGGTCTCCGCAGGAACCAAAATTTTGGAATCATTT- 230
||||||||||| |||||||||||||| ||| |||||||||||||||||||| || |||
Sbjct 180 TCGCTCCGTCTAATCCAGACTCGCCGGCCTCTGCAGGAACCAAAATTTTGGAGTC-TTTA 238
Query 231 AAGGAGGAATTCGAAGTCGGATCCCGCGTGGTCTCGTTTGAGACTGGAAAAATCGCTCGC 290
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 239 AAGGAGGAATTCGAAGTCGGATCCCGAGTGGTCTCCTTTGAGACGGGAAAAATCGCCCGC 298
Query 291 TTTGCTAATGGTTCAGTTGTTCTCGGCATGGACGAGACCAAAGTTCTCTCTACTGTTACT 350
||||| ||||| || || || |||||||||||| |||||||||| |||||||||||||||
Sbjct 299 TTTGCAAATGGGTCCGTCGTCCTCGGCATGGACCAGACCAAAGTGCTCTCTACTGTTACT 358
Query 351 TGTGCTAAGACCGACTCGCCTCGGGACTTCTTACCTCTCACTGTTGACTATCAAGAGAAG 410
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 359 TGTGCTAAGACTGACTCGCCTCGGGACTTCTTGCCTCTCACTGTTGACTATCAAGAGAAG 418
Query 411 CAATACGCTCAGGGATTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAG 470
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAATACGCTCAGGGTTTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAG 478
Query 471 CGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTACAGGG 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 CGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTTCAGGG 538
Query 531 TTTTACCATGAAGTTCAGATAATGGCAAGTGTTCTATCGTCAGATGGGAAGCAGGATCCA 590
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 539 TTTTACCATGAAGTTCAGATAATGGCTAGTGTTCTATCGTCGGATGGGAAGCAGGATCCA 598
Query 591 GATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGA 658
Query 651 GGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCAACT 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 GGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCGACT 718
Query 711 ATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACT 778
Query 771 ATGATGATTGATGTTCAATCCCGAGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGG 830
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGATGATTGATGTTCAATCCCGTGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGG 838
Query 831 CTAGCTCATCCAGAGGCTGTCAAGTACCTTGATCCCCAAATTAGATTGGCAGAAAAAGCT 890
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 839 CTAGCTCATCCAGAGGCTGTTAAGTACCTTGATCCCCAAATAAGATTGGCAGAAAAAGCT 898
Query 891 GGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGATAAAACTTTAGAAAAAGTG 950
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 GGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGAGAAAACTTTAGAAAAAGTG 958
Query 951 GCTGACTTGGCTGCAACGCGTATTGAATCCGTCTTTACCGACCCTTCATATGGAAAGTTT 1010
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 ACTGACTTGGCTGCAACACGTATTGAATCCGTCTTCACCGACCCTTCATATGGAAAGTTT 1018
Query 1011 GAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAGGTATTTGAAGAAGAG 1070
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAAGTATTTGAAGAAGAG 1078
Query 1071 GGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGAGAAAGAAGGTA 1130
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1079 GGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGGGAAAGAAGGTA 1138
Query 1131 GTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGGAGACATGTTGATGAAGTT 1190
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1139 GTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGAAGACATCTTGATGAAGTT 1198
Query 1191 AGGCCCATCTACTGCGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCA 1250
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGGCCCATCTACTGTGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCT 1258
Query 1251 CGTGGAGATACGCAGGTGCTCTGTACTGTAACACTTGGAGCCCCAGCAGAAGCACAAAGC 1310
||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||
Sbjct 1259 CGTGGAGATACGCAGGTGCTCTGTACTGTCACACTTGGAGCCCCGGGAGAGGCACAAAGC 1318
Query 1311 TTGGATTCTCTTGTTGGCCCCCCGAAGAAGAGATTCATGCTTCACTACAGCTTTCCTCCA 1370
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1319 TTGGATTCCCTTGTTGGCCCCCCGAAAAAGAGATTTATGCTTCACTACAGCTTTCCACCA 1378
Query 1371 TATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGA 1438
Query 1431 ACACTTGCTGAGAAAGCATTGCTTGCTGTATTGCCCCCTGAAGAGGCTTTTCCTTATACC 1490
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1439 ACACTTGCTGAGAAAGCATTGCTTGCTGTCTTGCCCCCCGAAGAGGCTTTTCCTTATACT 1498
Query 1491 ATTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGCGTTTGT 1550
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 GTTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGTGTTTGT 1558
Query 1551 GGAGGTAGTATGGCATTGATGGATGCTGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTA 1610
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1559 GGAGGTAGTATGGCATTGATGGATGCCGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTA 1618
Query 1611 TCTGTTGGTCTTATCACCGATGTAGATCCATCAAGTGGTGAAATAAAGGACTACCGTATT 1670
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1619 TCCGTTGGTCTTATCACCGATGTGGATCCATCAAGTGGTGAAATAAAGGACTACCGTATA 1678
Query 1671 GTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGC 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGC 1738
Query 1731 ACACGAGATGGTGTGACAGCAATTCAGCTGGATATAAAGCCAGCTGGAATACCGTTGGAT 1790
|||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1739 ACACGAAATGGTGTGACGGCGATTCAGCTGGATATAAAGCCAGCTGGAATACCATTGGAC 1798
Query 1791 ATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATG 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATG 1858
Query 1851 GAGAGAAACATAAATTCCCCACGAGGCCAGGATGGGGCTTACTCTCCTCGGCTAGCAACG 1910
|||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||
Sbjct 1859 GAGAGAAACATAAATTCCCCCCGAGCCCAGGATGGGGCTTATTCACCTCGGCTAGCAACG 1918
Query 1911 CTCAAGTACTCCAATGACTCACTTCGTACCTTGATCGGACCTATGGGTGTACTCAAAAGA 1970
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1919 TTCAAGTACACCAATGACTCACTTCGTAGCTTGATCGGACCTATGGGTGTACTCAAAAGA 1978
Query 1971 AAGATTGAAGTGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTT 2030
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 AAGATTGAAGAGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTT 2038
Query 2031 GCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAACAAG-TTGACTTCATCATTGGTCG 2089
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2039 GCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAA-AAGGTTGACTTCATCATTGGTCG 2097
Query 2090 TGAACTAGTTGTTGGTGGTGTGTACAAAGGCACAGTGTCATCTATAAAAGAGTATGGTGC 2149
|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2098 TGAAATAGTTGTTGGTGGCGTGTACAAAGGCACAGTGACATCTATAAAAGAGTATGGTGC 2157
Query 2150 ATTTGTTGAGTTCCCTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCCCATGA 2209
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2158 ATTTGTTGAGTTCAGTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCTCATGA 2217
Query 2210 ACCAGTCTCCAAGGTTTCAGATGTATTAGATATTGGCCAGTGCATCACTACGATGTGCAT 2269
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2218 ACCAGTCTCCAAGGTTTCAGATGTATTACATATTGGCCAGTACATCACTACGATGTGCAT 2277
Query 2270 TGAAACCGATGTCCGTGGTAACATTAAATTATCCCGCAAAGCACTGTTGCCCAAACCCAA 2329
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2278 CGAAACCGATGTCCGGGGTAACATTAAATTATCCCGCAAAGCAATGTTGCCCAAACCCGA 2337
Query 2330 ACGCAAACCCGCATCTGATGCTGGAAAAGA-TCCGGTGATGAAAGAGTCGTCAACAGTCT 2388
|||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 2338 GCGCAAACCAGCATCTGATGCTGGAAAAGACTC-GGTGATGAAAGAGTCGTCAACTGTCT 2396
Query 2389 ACATAGAAAATTCTAGTGTTGGAGAGATTGTTGCAAGCATGCCCAGTATCGTAACGCCAC 2448
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2397 ACACAGAAACGTCTAGTGTTGGAGAGACTGTTGCAAGCATGCCCAGTATCGTAACGCCAC 2456
Query 2449 TTCAGAAATCTAGATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTAATG 2508
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2457 CTCAGAAATCTAAATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTCATG 2516
Query 2509 AGGCAGAGAAATCTTCCCCTGTGAACGACAACGACAAACCCAGACGCGCTGCTACATCAA 2568
|||||||||||||||||||||||||| | || |||||||||| ||||||| | ||| | |
Sbjct 2517 AGGCAGAGAAATCTTCCCCTGTGAACAAGAATGACAAACCCAAACGCGCTACGACACCGA 2576
Query 2569 AGCCAGACCGGAAACCCAAATCCACAGCCTCTAAACTGATTGCGACACAGAAGGAAGAGG 2628
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2577 AGCCAGACCGGAAACCCAAATCCACTGCCTCTAAACTGACTGCGACACAGAAGGAAGAGG 2636
Query 2629 AGGCACTCGAATCCATTGCTCCAGAAGAAACTTCAGCTGAATGTGGTGAGATACTGAAGC 2688
||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 2637 AGGTACTCGAATCCATTGCTCCAGAAGAAACTCCAGCTGAATGCGGTGAGACACTGAAGC 2696
Query 2689 AGGACGGGAAGCTAAAATCCGTTTCTCCCAAAAACAATAGCACTGCTTCTAACCTAGTAT 2748
||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||
Sbjct 2697 AGGACGGGAAGCTAAAATCCGCTTCGCCCAAAAACAGTAGCACTGATTCTAACCTAGTAT 2756
Query 2749 CATTTTCAAAAGCTAAGAAATCAACTATGAAGGAGAATCTATCAGAGAACAAGGCTGAAG 2808
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2757 CATCTTCAAAAGCTAAGAAATCAACTAGGAAGGAGAATCAATCAGAGAACAAGGCTGAAG 2816
Query 2809 AGAGTGCAT-CGGTTAGTACCCGAAAACTGAAAATAGGAACGGAGATGACAGCCACGGTC 2867
||||||||| || ||||||||||||| |||||||||||||| || ||||| |||| ||||
Sbjct 2817 AGAGTGCATTCG-TTAGTACCCGAAATCTGAAAATAGGAACAGAAATGACGGCCAAGGTC 2875
Query 2868 GACCATG-TTCGAGCCCTTGGATTGGTTCTTGATTTAGGTGGTGAAATCCGCGGTATGTA 2926
|| | | ||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2876 CACGA-GATTCGAGCCCGTGGATTGGTTCTTGATTTAGGTGGTGAACTCCGTGGTATGTA 2934
Query 2927 CATATTCCAGGGAGAT-AA-AGATA-AGTTCAAAAAAGGAGACACATTGCGAGTGAAATG 2983
|| |||| ||| |||| || ||| | |||| || | ||||||||||||| |||||||||
Sbjct 2935 CAAATTCAAGGAAGATGAAGAGACAGAGTTTGAAGAGGGAGACACATTGCAAGTGAAATG 2994
Query 2984 TACAAGTTTTAACACCAAAGGAGTCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGA 3043
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2995 TACAAGTTTTAGTACTAAAGGAATCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGA 3054
Query 3044 ATAGTGGTAAACTCTCTTTCCTTTCTACAAGGTTTTTTCAACCCAAGGGATCATGTGGAG 3103
|||||||||||||||||||||| |||| ||||||||| ||||||||| | |
Sbjct 3055 ATAGTGGTAAACTCTCTTTCCTCTCTAGAAGGTTTTT--AACCCAAGG--T--T------ 3102
Query 3104 TCGATCATATGGATCATACGAGAGTTTTGCTTGAAATGTTTTTA-TCATACGGATCGAAT 3162
| || | | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 3103 -C-AT-A-------C----GAGAGTTTTGCTTGAAATGTTTTTAAT-ATACGGATCGAAT 3147
Query 3163 CAAGAGATGCTCGTTAGCTGCTTTTGGTGAGCAAATCTTGGTAGATGGATAGATTCATTG 3222
||||||| | || ||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 3148 CAAGAGAAGATCTTTAGCTGCTTTTGATGAGCAAATCTTGGTAGAT--A--GATTCATTG 3203
Query 3223 GCGTCACAACTTGAGGAAAGCTAATGAACTCGGTTAG-GTAACTAGTCTTTTACTTTGGC 3281
||||||||||||||||||| |||||||| || ||||| |||||| |||||||||||||||
Sbjct 3204 GCGTCACAACTTGAGGAAAACTAATGAAATCAGTTAGCGTAACTCGTCTTTTACTTTGGC 3263
Query 3282 CTTGTGATGTGCCATTTTGTTTCTCTTTTATTgggggggTTTTGTGGAACCGAAAGTGGA 3341
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 3264 CTTGTGATGTGCCGTTTTGTTTCTCTTTTATTGGGTGG-TTTTGTGGAACCGAAAGTGGA 3322
Query 3342 TTGTATTGTTTAGTGTCTTAGTAACTGACGTCTGAAAGGTGCGTAACGC-AAGTTTCATC 3400
|||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 3323 TTGTATGGTTTAGTGTTTTAGTAACTGACGTATGAAAGGTGCGTAACGTTAAGTTTCATC 3382
Query 3401 ATTTTTGTCCAATTTTTAC 3419
|||||||||||||| |||
Sbjct 3383 TTTTTTGTCCAATTTCTAC 3401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129091287616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5