BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14590.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488300 jgi|Araly1|488300|fgenesh2_kg.6__1434__AT5G14590.1 2497 0.0
> Ahg488300 jgi|Araly1|488300|fgenesh2_kg.6__1434__AT5G14590.1
Length=1746
Score = 2497 bits (1352), Expect = 0.0
Identities = 1546/1633 (95%), Gaps = 39/1633 (2%)
Strand=Plus/Plus
Query 13 CTCAGAGCACACTTTAGCAATAAACTTGCCGACCGAAAGCTGCAGATTCACTGATTCAGT 72
|||||||||| ||||||||||||||||| | || ||||| | |||| ||||||||
Sbjct 1 CTCAGAGCACGCTTTAGCAATAAACTTG--G--CG-AAGCT--A-TTTCA--GATTCAGT 50
Query 73 GATCGAAGTTGAGAGTTTGGGTT-GAGGTCGGAGTCTCGGATGCTGAATAAGCTCACGCA 131
| |||||||||| || | || ||||||||||| ||||||||||||||||||||||||
Sbjct 51 GGTCGAAGTTGA-AGGAAAGATTAGAGGTCGGAGTATCGGATGCTGAATAAGCTCACGCA 109
Query 132 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 169
Query 192 TTTATCGTCTTCGTTCG-TT-T-C------TTC---G-A--------GATTTCTTAGTTC 230
||||||||||||||||| || | | ||| | | ||||||| |||||
Sbjct 170 TTTATCGTCTTCGTTCGCTTCTACTAGGAATTCATGGAAGTCTCCGGGATTTCTCAGTTC 229
Query 231 CGGTATATTCTCTAGTGGCGCTTCGAGGAATCGCGTGACTTTTCCCGTTCAGTTTCATCG 290
||||||||||| | ||||||||||||||||||| || |||||| |||||||| ||||||
Sbjct 230 CGGTATATTCTTTGGTGGCGCTTCGAGGAATCGTGTTTCTTTTCACGTTCAGTCTCATCG 289
Query 291 CGCATCAGCTGTTCGATGTTTTGCTTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 290 CGCATCAGCTGTTCGATGTTTTGCCTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 349
Query 351 TCCTATCGTTGAAATGGATGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 410
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TCCTATCGTTGAAATGGACGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 409
Query 411 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 469
Query 471 TCGCGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TCGTGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 529
Query 531 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 589
Query 591 GAAATCAATGTGGAGGAGTCCTAATGGGACGATCAGAAACATTCTAGATGGAACCGTATT 650
|||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||
Sbjct 590 GAAATCAATGTGGAGGAGTCCTAATGGGACAATCAGAAACATTTTAGATGGTACTGTATT 649
Query 651 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGGAAAAGCCTAT 710
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 650 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGAAAAAGCCTAT 709
Query 711 ATGCATTGGTAGACATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 770
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGCATTGGTAGGCATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 769
Query 771 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAGAAGATGGAAACGCACCTGTGGAGCTAGA 830
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAAAAGATGGAAACGCACCTGTGGAGCTAGA 829
Query 831 TGTATATGATTTCAAGGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 890
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGTATATGATTTCAAAGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 889
Query 891 TAGAGCTTTTGCTGAGTCATCTATGGCGATGGCATTAACTAAGAAATGGCCATTATACTT 950
| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 890 TCGAGCTTTTGCTGAGTCATCTATGGCGATTGCATTAACTAAGAAATGGCCACTATACTT 949
Query 951 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTTAAGGACATATTTCAAGA 1010
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 950 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTCAAGGACATATTTCAAGA 1009
Query 1011 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTACGAGCACCG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1010 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTATGAGCACCG 1069
Query 1071 GTTGATTGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGTGGCTATGTCTGGGCTTG 1130
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1070 CTTGATCGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGGGGCTATGTCTGGGCATG 1129
Query 1131 CAAAAACTACGACGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1190
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CAAAAACTACGATGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1189
Query 1191 CCTCATGACCTCCGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1250
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCTCATGACCTCTGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1249
Query 1251 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1309
Query 1311 CATAGCCTCAATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1370
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CATTGCCTCCATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1369
Query 1371 CGAGAAATTAATGGATTTCGTGAAGAAGCTCGAGTCGTCATGTGTAAACACTGTTGAGAC 1430
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1370 CGAAAAATTAATGGATTTCGTGAAGAAGCTAGAGTCGTCATGTGTAAACACTGTTGAGAC 1429
Query 1431 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGTCCCAAGGTGAGTAGGGATTT 1490
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1430 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGCCCCAAGGTGAGTAGGGATTT 1489
Query 1491 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCCAAGCTCAAAACACAGTTCAA 1550
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1490 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCGAAGCTCAAAACACAGCTCAA 1549
Query 1551 AGAGCTTCCTCTTGTCTGA--C---C-ATTCCTGGGAATTGGGAACAATACAAAAATAAT 1604
||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 1550 AGAGCTTCCTCTTGTCTGAGTCTGACCATTCCTGGGAAGTGGGAACAATACAAAAATAAT 1609
Query 1605 GCTCGCAATAATT 1617
|||||||| ||||
Sbjct 1610 GCTCGCAACAATT 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5