BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14600.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325929 jgi|Araly1|325929|fgenesh1_pm.C_scaffold_6001149 1404 0.0
> Ahg325929 jgi|Araly1|325929|fgenesh1_pm.C_scaffold_6001149
Length=1128
Score = 1404 bits (760), Expect = 0.0
Identities = 870/922 (94%), Gaps = 12/922 (1%)
Strand=Plus/Plus
Query 164 ATGTTACCAACTGAGTCAAAGAAAGCCTTTTCATTCAAAAGGTGTATTGAAGATGGGGAC 223
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1 ATGTTGCCAACTGAGTCAAAGAAAGCCTTATCTTTCAAAAGGTGTATTGAAGATGGCGAC 60
Query 224 TTAGTTATTGTTTACGAAAGACATGATGTGATGAAACCAGTTAAAGTAAGTAAAGACGGT 283
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 61 TTAGTTATCGTTTACGAAAGACATGATGTGATGAAACCAGTGAAAGTAAGCAAAGACGCT 120
Query 284 GTGCTTCAGAACCGTTTTGGTGTGTATAAGCACTCGGATTGGATTGGGAAACCATTAGGG 343
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 GTGCTTCAGAACCGTTTTGGTGTGTATAAACACTCGGATTGGATTGGGAAGCCATTAGGG 180
Query 344 ACGAAAGTATTCAGCAACAAGGGTAAATTTGTGTACCTGTTGGCTCCTACTCCTGAACTA 403
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 181 ACTAAAGTATTCAGCAACAAGGGTAAATTTGTATACCTCTTGGCTCCTACTCCTGAGCTA 240
Query 404 TGGACATTGGTTTTAAGCCACAGGACTCAAATTCTTTACATTGCGGATATTAGCTTTGTG 463
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TGGACACTGGTTTTAAGCCACAGGACTCAGATTCTTTACATTGCGGATATTAGCTTTGTG 300
Query 464 GTTATGTATCTAGAAGTCGTGCCTGGCTGTGTTGTTCTTGAGTCAGGCACAGGTAGTGGT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GTTATGTATCTAGAAGTCGTGCCTGGCTGTGTTGTTCTTGAGTCAGGCACAGGAAGTGGT 360
Query 524 TCGCTTTCGACCTCACTTGCTCGAGCTGTGGCTCCAACTGGACACGTTTATTCATTTGAT 583
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 TCGCTTTCAACGTCACTTGCTCGAGCTGTGGCTCCAACTGGACATGTTTATTCATTTGAT 420
Query 584 TTCCATGAGCAGCGAGCTGTCTCTGCAAGGGAAGATTTTGAGAAGACGGGCATAAGTAGT 643
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 421 TTCCATGAGCAACGAGCTGTCTCTGCAAGGGAAGATTTTGAGAAGACTGGAATTAGTAGT 480
Query 644 TTAGTAACCGTAGAGGTTAGAGACATTCAAGGAGAGGGTTTTCCTGAGAAACTGTCAGGT 703
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 TTAGTAACTGTAGAGGTTAGAGATATTCAAGGAGAAGGTTTTCCTGAGAAACTGTCAGGT 540
Query 704 TTGGCTGATTCTGTGTTTCTAGACCTTCCACAGCCTTGGCTTGCGGTTCCTTCTGCAGCA 763
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 541 TTGGCTGATTCTGTGTTTCTAGACCTTCCACAGCCTTGGCTCGCAGTTCCTTCTGCAGCA 600
Query 764 AAGATGTTAAAGCAGGATGGAGTTCTATGCTCTTTCTCACCTTGCATCGAGCAAGTACAA 823
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAATGTTAAAGCAGGATGGAGTTCTATGCTCTTTCTCACCTTGCATCGAGCAAGTACAA 660
Query 824 CGGACTTGTGAAGTCCTCAGATCAGATTTCAT-------T-----GAGATAAGAACGTTT 871
|||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 661 CGGACTTGTGAAGTCCTCAGATCAGATTTCATAGGCAAGTTTTCAGAGATAAGAACGTTC 720
Query 872 GAGGTGCTTCTCAGAACATATGAAGTGAAGGAAGTGAAAATGGATACCAGTAGCATGGTT 931
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GAGGTGCTTCTCAGAACATATGAAGTGAAGGAAGTGAAAATGGACACCAGTAGCATGGTT 780
Query 932 GGTGAGAGCCACGAGGAGGACAATGAAGGAATGAGGCCTTGCAAGAGAAAGCACCGTTCA 991
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 781 GGTGAGAGCCACGAGGAGGACAATGAAGGAATGAGACCTTGCAAGAGAAAACACCGTTCA 840
Query 992 AACGAAAACGACACTGTTTCACAGGACAACTCTTCTAATGCTTCTTCAGTCGTCATGGCT 1051
|||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 AACGAAGACGTCACCGTTTCACAGGACAACTCTTCTAATGCAACTTCAGTCGTCATGGCT 900
Query 1052 CGGCCTTGTAGTGAAGCAAGAG 1073
||||||||||| ||||||||||
Sbjct 901 CGGCCTTGTAGCGAAGCAAGAG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5