BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14620.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488304 jgi|Araly1|488304|fgenesh2_kg.6__1438__AT5G14620.1 2907 0.0
> Ahg488304 jgi|Araly1|488304|fgenesh2_kg.6__1438__AT5G14620.1
Length=2181
Score = 2907 bits (1574), Expect = 0.0
Identities = 2002/2203 (91%), Gaps = 51/2203 (2%)
Strand=Plus/Plus
Query 10 TCCAGTAAACTGACGACGATACA-AGCTCTCTCACCAACGGCGACAGTATCTTTGCCGGC 68
|||||||||| ||||||| ||| |||||||||||| ||||||||| |||||||||||||
Sbjct 1 TCCAGTAAACGGACGACGGGACAGAGCTCTCTCACCGACGGCGACATTATCTTTGCCGGC 60
Query 69 GGCGGGAGCGCTTCTGCTTAATCTGTAGCTCAA-A---CTAAA----AATT-C-TCTGG- 117
|||| ||||| |||||| ||||||||| || || | ||||| ||| | | |||
Sbjct 61 GGCGAGAGCGTTTCTGCATAATCTGTA-CTAAATACTTCTAAATTTCGATTACTTATGGC 119
Query 118 G---TATTACT-CATGGTGATTTGGA--ATAACGA-T-G-AT---GATGATTTTTTGGAG 165
| ||| || | ||||||| || | || | | || |||||| |||||||
Sbjct 120 GCAAGATT-CTGC-TGGTGATGACGATTTTGTTGATTGGAATACCGATGATGATTTGGAG 177
Query 166 ATTGATAACTTTCAATCTTCTCCACGGTCATCTCCAATACATGCAATGCAGTGTAGGGTC 225
|| ||||||||||| || ||||||| ||||||||||||||| | | | ||||||
Sbjct 178 ATCGATAACTTTCAGTCATCTCCACCGTCATCTCCAATACA-G---T-C----CAGGGTC 228
Query 226 GAAAATCTAGCTGGTGTAGCCGTGACAACTAGTTCTTTGAGCTCTCCTACTGAGACAACT 285
|||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 229 GAAACTTTAGTTGGTGTAGCCGTGACAACTAGTTCTTTGAACTCTCCTACTGAGACAACT 288
Query 286 GATTTAGTTCAGATGGGCTTCTCAGACGAGGTTTTTGCTACATTGTTTGACATGGGATTT 345
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 289 GATTTAGTTCAGATGGGCTTCTCAGACGAGATTTTTGCTACATTGTTTGACATGGGTTTT 348
Query 346 CCTGTTGAGATGATTTCTAGAGCGATCAAGGAAACTGGACCAAATGTAGAAACTTCGGTT 405
||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 349 CCTGTTGAGATGATTACTAGAGCAATCAAGGAAACTGGTCCAAATGCAGAAACTTCGGTT 408
Query 406 ATAATTGATACTATCTCCAAATACTCAAGCGACTGTGAAGCTGGTTCTTCCAAGTCCAAG 465
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 409 ATAATTGATACTATCTCCAAATACTCAAGCAACTGTGAAGCTGGTTCTTCCAAGTCCAAG 468
Query 466 GCTATTGATCATTTCCTTGCTATGGGATTTGATGAAGAAAAAGTTGTCAAAGCCATTCAA 525
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 469 GCTATTGATCATTTCCTTGCGATGGGATTTGATGAGGAAAAAGTTATCAAAGCCATTCAA 528
Query 526 GAACATGGAGAAGACAATATGGAAGCAATTGCAAATGCATTGCTCTCTTGTCCAGAGGCT 585
|||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 529 GAACATGGAGAAGAAAATATGGAAGCAATTGCAAATGCACTCCTCTCTTGTGCAGAGGCT 588
Query 586 AAGAAACTGCCAGCAGCAGTAGAGGAAGAAGATGGCATTGACTGGTCATCAAGTGATGAT 645
|||||||| | ||| ||||||||||||||||| |||||||||| ||||| |||||
Sbjct 589 GAGAAACTG-C--CAGTAGTAGAGGAAGAAGATGTCATTGACTGG---TCAAGCGATGAC 642
Query 646 GATACCAATTACACCGATATGTTAAACTCAGATGATGAGAAAGATCCAAACTC-AAATGA 704
|| ||||||||| ||||||| ||| ||||||||||||||| ||||||||||| ||| ||
Sbjct 643 GAGACCAATTACTCCGATATATTAGTCTCAGATGATGAGAAGGATCCAAACTCTAAA-GA 701
Query 705 AAATGGCAGCAAAATACGGTCTTTGGTGAAG-ATGGGTTTCTCAGAGCTTGAAGCTTCTT 763
||| | | | ||||||||||||||||| || |||| |||||| ||||| |||||||||
Sbjct 702 AAACAGTAACCAAATACGGTCTTTGGTG-AGAATGGTTTTCTCGGAGCTGGAAGCTTCTC 760
Query 764 TAGCTGTCGAGAGATGTGGAGAAAATGTGGATATTGCAGAGCTCACAGACTTCCTTTGTG 823
||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 761 TAGCTGTGGAGAGATGCGGAGAAAATGTGGACATTGCAGAGCTCACGGACTTCCTTTGTG 820
Query 824 CTGCTCAA-ATGGCTAGGGAATTTAGTGAGTTTTACACTGAACATGAAGAACAAAAGCCT 882
||||| || |||||||| ||||||||||||||| ||||||| | |||||||| |||||||
Sbjct 821 CTGCT-AAGATGGCTAGAGAATTTAGTGAGTTTCACACTGACCCTGAAGAACGAAAGCCT 879
Query 883 AGACATAATATTAAGAAAAGGCGGTTTGAGTCAAAAGGAGAGCCAAGATCATCTGTTGAT 942
||| || | ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 880 AGAAATGACATTAAGAAAAGGCGGTTAGAGTCAAAAAAAGAGCCAAGGTCATCTGTTGAT 939
Query 943 GACGAGCCGATTCGTCTACCAAATCCAATGATAGGATTTGGGGTTCCAAACGAGCCCGGA 1002
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 940 GACGAGCCGGTTCGCCTACCAAATCCAATGATAGGATTTGGGGTTCCAAACGAGCCAGGA 999
Query 1003 CTCATTACACATAGATCGCTTCCAGAGTTAGCCCGAGGGCCACCTTTTTTCTACTATGAG 1062
||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1000 CTCATCACACATCGATCGCTTCCGGAGTTAGCCCGAGGGCCACCTTTTTTCTACTACGAG 1059
Query 1063 AATGTCGCCCTCACACCTAAAGGCGTTTGGGAGACTATTTCCAGGCACTTGTTCGAGATC 1122
||||||||||| |||||||||||||||||||||||||| || || ||| | ||||| |||
Sbjct 1060 AATGTCGCCCTTACACCTAAAGGCGTTTGGGAGACTATCTCAAGACACCTATTCGATATC 1119
Query 1123 CCACCTGAGTTTGTGGACTCAAAATATTTCTGTGTTGCAGCGAGGAAGAGAGGCTACATC 1182
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1120 CCACCTGAGTTTGTGGATTCAAAATATTTCTGTGCTGCAGCGAGGAAGAGAGGCTACATC 1179
Query 1183 CACAATCTCCCCATCAACAACAGATTTCAGATTCAGCCTCCACCAAAATACACCATCCAT 1242
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1180 CACAATCTCCCCATCAACAACAGATTCCAGATTCAGCCTCCACCAAAATACACCATTCAT 1239
Query 1243 GATGCATTTCCTTTGAGTAAGAGATGGTGGCCAGAATGGGATAAAAGGACCAAGCTTAAT 1302
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1240 GATGCATTTCCTTTGAGTAAGAGATGGTGGCCAGACTGGGATAAAAGAACCAAACTTAAT 1299
Query 1303 TGCATTTTGACTTGTACAGGTAGTGCTCAGTTGACTAACAGGATTCGTGTAGCCCTTGAG 1362
|||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||
Sbjct 1300 TGCATTTTGACTTGTACAGGCAGTGCCCAGTTAACTAACAGGATCCGTTTAGCCCTTGAG 1359
Query 1363 CCTTACAATGAAGAACCAGAACCGCCTAAGCATGTACAAAGATATGTGATTGACCAGTGC 1422
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1360 CCTTACAATGGAGAACCAGAGCCGCCTAAGCATGTACAGAGATATGTGATTGACCAGTGC 1419
Query 1423 AAAAAATGGAATTTGGTTTGGGTGGGTAAAAACAAAGCTGCCCCACTCGAGCCAGATGAG 1482
| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1420 AGAAGATGGAATCTGGTTTGGGTGGGGAAAAACAAAGCTGCCCCACTCGAGCCAGATGAG 1479
Query 1483 ATGGAGAGTATTCTGGGATTTCCAAAAAATCATACTCGTGGTGGAGGCATGAGTAGAACT 1542
||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1480 ATGGAGAATATTCTGGGATTTCCAAAGAATCATACTCGTGGTGGAGGAATGAGTAGAACT 1539
Query 1543 GAGCGCTTCAAGTCCT-TAGGAAATTCGTTTCAGGTTGATACTGTGGCGTATCATCTGTC 1601
||||||| ||||| || | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1540 GAGCGCTACAAGT-CTCTGGGAAATTCTTTTCAGGTTGATACTGTGGCGTATCATCTGTC 1598
Query 1602 TGTCCTGAAGCCCATTTTCCCACATGGAATCAATGTTCTCTCTCTTTTCACGGGTATTGG 1661
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TGTCCTGAAACCCATCTTCCCACATGGAATCAATGTTCTCTCTCTTTTCACGGGTATTGG 1658
Query 1662 TGGTGGGGAAGTGGCACTTCATCGTCTCCAAATCAAAATGAAGCTTGTTGTGTCTGTTGA 1721
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1659 TGGTGGAGAAGTGGCGCTTCATCGTCTCCAAATCAGAATGAAGCTTGTTGTGTCTGTTGA 1718
Query 1722 GATTTCAAAAGTCAACAGAAATATTTTGAAGGACTTTTGGGAGCAAACTAACCAGACTGG 1781
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1719 GATCTCAAAAGTCAACAGAAATATTTTGAAGGACTTCTGGGAGCAAACTAACCAGACTGG 1778
Query 1782 AGAATTGATCGAGTTTTCAGACATCCAACACTTGACTAATGACACAATCGAAGGGTTGAT 1841
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1779 AGTTTTGATCGAGTTTTCAGACATCCAACACTTGACTAATGATACAATCGAAGGGTTGAT 1838
Query 1842 GGAGAAATATGGTGGATTTGATCTTGTAATTGGAGGAAGTCCTTGTAACAATCTGGCAGG 1901
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 1839 GGAGAAATATGGTGGATTTGATCTTGTAATCGGAGGAAGTCCTTGCAACAATCTTGCAGG 1898
Query 1902 CGGTAATAGGGTAAGCCGAGTTGGTCTTGAAGGTGATCAATCTTCGTTGTTCTTTGAGTA 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 CGGTAATAGGGTAAGCCGAGTTGGTCTTGAAGGTGATCAATCTTCGTTGTTCTTTGAGTA 1958
Query 1962 TTGCCGTATTCTAGAGGTGGTACGTGCGAGGATGAGAGGATCTTGATCATTCACATTACC 2021
|||||||||||| |||||||| ||||| ||||||||| |||||||||||||||| |||||
Sbjct 1959 TTGCCGTATTCTGGAGGTGGTGCGTGCAAGGATGAGAAGATCTTGATCATTCACTTTACC 2018
Query 2022 TGAAGTAGATTGAAGTAGATATGACTCCATGAAATCTAGTTGAACTTTATTTTTCTA-TA 2080
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 2019 TGAAGTAGATTGAAGTAGATATGACTTGTTGAAATCTTGTTGAACTTTATTTTTCTCGTA 2078
Query 2081 TCTGTTATGTAATATGGCCATGAAGGTACATTTTTGAATAATATAAGTCAACCTAACTCT 2140
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2079 TCTGTTATGTAATTTGGCCATGAAGGTACATCATTGAATAACATAAGTCAACCTAACTCT 2138
Query 2141 CTTTTGCTTTTTGCGACAATATATCTGCAACTGCATTTGCACT 2183
|||||| |||||||| |||| |||||||| |||||||||||||
Sbjct 2139 CTTTTGGTTTTTGCGCCAATGTATCTGCAGCTGCATTTGCACT 2181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5