BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14650.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488306 jgi|Araly1|488306|fgenesh2_kg.6__1440__AT5G14650.1 1738 0.0
> Ahg488306 jgi|Araly1|488306|fgenesh2_kg.6__1440__AT5G14650.1
Length=1463
Score = 1738 bits (941), Expect = 0.0
Identities = 1041/1088 (96%), Gaps = 11/1088 (1%)
Strand=Plus/Plus
Query 463 AATTCAAAGCACTTCAAGGAATCACTATAAAAGGAAAAGGGATCATCGATGGACGAGGAT 522
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 386 AATTCAAATCACTTAAAGGAATCACTATAAAAGGAAAAGGGATAATCGATGGACGAGGAT 445
Query 523 CAGTATGGTGGAACGACATGATGGGTACAAAAATGCCAAGGACCAAACCAACAGCTTTGA 582
||||||||||| | ||| | | | |||||||||||||||||||||||||||||||
Sbjct 446 CAGTATGGTGG-A--ACA--A--CG--CGAAAATGCCAAGGACCAAACCAACAGCTTTGA 496
Query 583 GGTTCTACGGGAGTAACGGTGTTACGGTCAGTGGAATAACCATACAGAACAGCCCTCAAA 642
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 497 GGTTCTACGGGAGTAACGGTGTAACGGTCAGTGGAATAACCATACAGAACAGCCCTCAAA 556
Query 643 CCCACCTCAAGTTTGATAACTGCATAAGCATCCAAGTTTCTGATTTCACAACTTCATCCC 702
|||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 557 CCCATCTCAAGTTTGATAACTGCAAAAGCATTCAAGTGTCTGATTTCACAACTTCATCCC 616
Query 703 CTGGAGATTCCCCAAACACAGATGGAATCCACCTGCAAAACTCTCAAGATGCCGTTATAT 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 617 CTGGAGATTCCCCAAACACAGATGGAATCCACCTGCAAAACTCTCAAGATGCCGTTATTT 676
Query 763 ATCGCAGCACGCTGGCTTGTGGAGATGACTGTATATCAATTCAAACGGGATGCTCGAATA 822
| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 677 ACCGCAGCACACTGGCCTGTGGAGATGACTGTATATCAATTCAAACTGGATGCTCGAATA 736
Query 823 TCAACATACACGATGTAGACTGTGGCCCTGGCCATGGAATTAGCATTGGAGGACTGGGAA 882
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 737 TCAACATACACGATGTAGACTGTGGGCCTGGCCATGGAATTAGCATTGGAGGACTGGGAA 796
Query 883 AGGACAATACAAAGGCGTGTGTTTCAAACATCACTGTCCGTGATGTCACGATGCATGAAA 942
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 797 AGGACAATACAAAGGCGTGTGTTTCAAACATCACTGTCCGTGATGTCAAGATGCATGAAA 856
Query 943 CTACGAATGGTGTTCGAATAAAGTCCTGGCAGGGAGGATCAGGGTCTGTAAAACAAGTTA 1002
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 857 CTACGAATGGTGTTCGAATAAAGTCCTGGCAGGGAGGATCAGGGTCTGTAAAGCAAGTTA 916
Query 1003 TGTTTTCAAATATTCAAGTCAGCAACGTAGCCAATCCAATAATAATAGATCAATATTACT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TGTTTTCAAATATTCAAGTCAGCAACGTAGCCAATCCAATAATAATAGATCAATATTACT 976
Query 1063 GCGATGGTGGCGGATGCCACAATGAAACTTCAGCAGTCGCTGTATCAAACATAAACTACA 1122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 977 GCGATGGTGGCGGATGCCATAATGAAACTTCAGCAGTCGCTGTATCAAACATAAACTACA 1036
Query 1123 TAAACATAAAAGGTACCTACACCAAAGAACCTGTACGCTTTGCCTGCAGTGATAGCTTGC 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TAAACATAAAAGGTACCTACACCAAAGAACCTGTACGCTTTGCCTGCAGTGATAGCTTGC 1096
Query 1183 CATGCACAGGAATCTCACTGTCGACCATCGAGCTTAAGCCAGCCACAGGAAAAGCAAGTT 1242
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1097 CATGCACAGGAATCTCACTTTCGACCATAGAGCTTAAGCCAGCCACAGGAAAAGCAAGTT 1156
Query 1243 CACTTGATCCTTTCTGCTGGAAAGCACACGGTGAACTGAAGACAAAAACTCTTCCACCAA 1302
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1157 CACTAGATCCTTTCTGCTGGAAGGCACACGGTGAACTGAAGACAAAAACTCTTCCACCAA 1216
Query 1303 TACAATGTTTGAAAACAGAAAAGTCACCGGAAGCTGCAAGTCGGTCTAATAATGATGCTT 1362
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1217 TACAATGTTTGAAAACAGAAAAGTCACCAGAAGCTGCAAGCCGGTCTAATAATGATGCTT 1276
Query 1363 GCTGATATTAGAGTAAGAAATTATGT-AGAAATGTTAAGATAGGCCACACATTATACGAA 1421
|||||||||||||||||||||||||| | |||||| ||| ||||||||||| ||||||||
Sbjct 1277 GCTGATATTAGAGTAAGAAATTATGTTA-AAATGTCAAGGTAGGCCACACAATATACGAA 1335
Query 1422 TAAAGAAGGGTTTGATTCCCTTCCTTTGTCTTATACTAGTTTTTATAAATCATTTGCAAA 1481
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1336 TAAAGAAGGGTTTGAATCTCTTCCTTTGTCATATACTAGTTTTTATAAATCATTTGCAAA 1395
Query 1482 CACAATGTAATATATGGCATGCAATGTATTGCATTCTGTTATAGACAATTGGAAGTTATT 1541
|| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1396 CAAAATGTAATATATCGCATGCAATGTATTGCATTCTGTTATAGACTATTGGGAGTTATT 1455
Query 1542 GAGTTAGT 1549
|| |||||
Sbjct 1456 GAATTAGT 1463
Score = 580 bits (314), Expect = 8e-165
Identities = 360/383 (94%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 45 TTTACAATATTAAAGATGTGTAGACTAACATTGAAATGTCTTTCCCTGAACTTTCTCCTC 104
||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||
Sbjct 1 TTTTCAATATTAAAGATGTATAGACTAACCTTGAAATGTCTTTCTCTGAACTTTCTTCTC 60
Query 105 TTAATCTCCTTATTCTCTTCGAGATTCGGGACTTGTGACGCTAGGTACAGTGTATACTGG 164
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 61 TTAATCTCCTTACTCTCTTCGAGGTTCGGGACTTGTGACGCTAGGCACAGTGTATACTGG 120
Query 165 AAAGGAAACCGAAGGTCTATCGCCGAAGGGGGAAGTTCCGGAACAATCAATGTGCTTGAC 224
||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 121 AAAGGAAACCGCAGGTCTATCGCCCAAGGGGAAAGTTCAGGAACAATCAATGTGCTTGAC 180
Query 225 CATGGCGCAAAAGGTGACGGGACAAGTGATGACACAAAGGCTTTTGAAGATGCTTGGCAG 284
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 181 CATGGCGCAAAAGGTGATGGGAAAAGTGATGACACAAAGGCTTTTGAAGATGCTTGGAAG 240
Query 285 GTAGCTTGTAAGGTGGCAGCGTCAACATTATTAGTTCCATCTGGTTCTACGTTCCTTGTT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTAGCTTGTAAGGTGGCAGCGTCAACATTATTAGTTCCATCTGGTTCTACGTTCCTTGTT 300
Query 345 GGACCTGTTTCCTTCCTGGGAAAAGAATGTAAAGAGAAAATCGTCTTTCAGTTAGAAGGA 404
|| ||| |||| |||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct 301 GGTCCTATTTCTTTCCTGGGAAAAGAATGTAAAGAGAACATTGTGTTTCAGATAGATGGA 360
Query 405 AAGATCATAGCTCCAACGAGTGC 427
|||||||||||||||||||||||
Sbjct 361 AAGATCATAGCTCCAACGAGTGC 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5