BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14660.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893370 jgi|Araly1|893370|Al_scaffold_0006_1366 1291 0.0
> Ahg893370 jgi|Araly1|893370|Al_scaffold_0006_1366
Length=822
Score = 1291 bits (699), Expect = 0.0
Identities = 781/822 (95%), Gaps = 0/822 (0%)
Strand=Plus/Plus
Query 76 ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCATACTCCTACCGGTT 135
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1 ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCTTATTCTTACCGGTT 60
Query 136 TTATCTCGCCGAGCTACTACTCTCTCTGCCGGTTATGGTCGGCTCAAATCCACGGTCACG 195
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 61 TTATCTCGCCGAGCTACTACACTCTCTGCCGGTTATGGTCGGCTCAAATCCACCGTCATG 120
Query 196 TTCTGCTCTACTGTGAACCGGACCAGTCCTCTGACATCTTCGGTCCGCGCAGAAGTAAAG 255
||||||||||||| |||||||||||||| ||||| |||| |||| ||||| |||||||||
Sbjct 121 TTCTGCTCTACTGGGAACCGGACCAGTCTTCTGATATCTCCGGTTCGCGCTGAAGTAAAG 180
Query 256 CGCGTCTCGCGTAAAGACGATAAAGTAGCTTCAGCTACTGATGTTCAATTTGAGACGCCT 315
|||||||| |||||||||| | |||||||||||||| ||||| ||||||||||||| |||
Sbjct 181 CGCGTCTCACGTAAAGACGTTGAAGTAGCTTCAGCTTCTGATCTTCAATTTGAGACTCCT 240
Query 316 TTGAAGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGATATT 375
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 TTGAGGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGGTGTT 300
Query 376 TTTGACGAGAATTTAAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGAT 435
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGACCAGAATTTGAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGAT 360
Query 436 GGCATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTCATGGTGTTTAATCCA 495
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GGTATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTTATGGTGTTTAATCCA 420
Query 496 GCTGGAGAGCCTGGAGAAGGAAAAGAAATTGTCCTTGTAAATCCGAAAATCAAGAAATAT 555
||||| |||||||| |||||| |||||||||| ||||||||||||| ||||||||||||
Sbjct 421 GCTGGGGAGCCTGGTGAAGGAGAAGAAATTGTTCTTGTAAATCCGATTATCAAGAAATAT 480
Query 556 TCCGATAAATTAGTACCGTTTGATGAAGGATGCCTCTCCTTCCCGGGGATCTATGCTGAA 615
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 481 TCCGATAAGTTAGTACCGTTTGATGAAGGATGCCTATCCTTCCCCGGGATCTATGCTGAA 540
Query 616 GTTGTTCGACCACAATCTGTCAAGATTGATGCAAGGGATATTACTGGTGAAAGATTTTCA 675
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 GTAGTTCGACCACAATCTGTCAAGATTGATGCAAGGGACATTACTGGTGAAAGATTTTCA 600
Query 676 ATCAGTCTATCACGTTTACCTGCACGAATCTTTCAGCACGAATACGACCATCTGGAGGGA 735
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 ATTAGTCTATCTCGTTTACCTGCACGAATCTTTCAGCACGAATATGACCATCTGGAGGGA 660
Query 736 GTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAG 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAG 720
Query 796 GCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTAGAAGCA 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 GCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTACAAGCA 780
Query 856 CGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA 897
||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5