BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14670.1
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325935 jgi|Araly1|325935|fgenesh1_pm.C_scaffold_6001155 900 0.0
Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1 508 1e-143
> Ahg325935 jgi|Araly1|325935|fgenesh1_pm.C_scaffold_6001155
Length=552
Score = 900 bits (487), Expect = 0.0
Identities = 530/551 (96%), Gaps = 2/551 (0%)
Strand=Plus/Plus
Query 1 ATGGGGCTTAATTTCACAAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCTTAATTTCACAAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGATT 60
Query 61 CTGATGGTAGGTCTTGATGCTGCTGGTAAGACCACTAT-CTTGTATAAGCTGAAGCTTGG 119
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 61 CTGATGGTAGGTCTTGATGCTGCTGGTAAGACCACTATTCTC-TACAAGCTGAAGCTTGG 119
Query 120 CGAAATCGTCACTACCATCCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAA 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAAATCGTCACTACCATTCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAA 179
Query 180 CATCAGCTTCACTGTTTGGGATGTGGGGGGTCAGGACAAGATTCGTCCCTTGTGGAGGCA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CATCAGCTTCACTGTTTGGGATGTGGGGGGTCAGGACAAGATTCGTCCCCTGTGGAGGCA 239
Query 240 CTATTTCCAAAACACTCAAGGTCTTATATTCGTGGTTGATAGCAACGACAGGGACCGAGT 299
||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 240 CTACTTCCAGAACACACAAGGTCTTATCTTTGTGGTTGATAGCAACGACAGGGACCGAGT 299
Query 300 TGTGGAAGCGAGGGATGAGTTACATCGCATGTTGAATGAGGATGAACTGAGGGATGCTGT 359
|||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGTGGAGGCGAGAGATGAATTACATCGCATGTTAAATGAGGATGAACTGAGGGATGCTGT 359
Query 360 CCTTCTTGTGTTTGCAAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATAAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTTCTTGTGTTTGCAAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATAAC 419
Query 420 TGATAAGCTTGGTCTTCACTCTCTTCGCCAACGCCATTGGTACATTCAAAGCACTTGTGC 479
||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 420 TGACAAGCTTGGACTTCACTCTCTTCGCCAACGCCATTGGTACATCCAAAGCACCTGTGC 479
Query 480 CACATCTGGAGAAGGTCTCTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTACCAA 539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CACATCTGGAGAAGGTCTTTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTAGCAA 539
Query 540 GGTAAATAACT 550
|||||||||||
Sbjct 540 GGTAAATAACT 550
> Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1
Length=900
Score = 508 bits (275), Expect = 1e-143
Identities = 461/552 (84%), Gaps = 7/552 (1%)
Strand=Plus/Plus
Query 1 ATGGGGCTT-AATTTCACAAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGAT 59
|||||| || | |||| | ||| |||| ||| |||||||||||||||| || ||| | ||
Sbjct 113 ATGGGG-TTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAAT 171
Query 60 TCTGATGGTAGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTATAAGCTGAAGCTTGG 119
||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 172 TCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGCTCAAGCTCGG 231
Query 120 CGAAATCGTCACTACCATCCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAA 179
|| || ||||| |||||||| || || || ||||| ||||| ||||| |||||||||||
Sbjct 232 AGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAA 291
Query 180 CATCAGCTTCACTGTTTGGGATGTGGGGGGTCAGGACAAGATTCGTCCCTTGTGGAGGCA 239
|||||| ||||| || |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 292 CATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACA 351
Query 240 CTATTTCCAAAACACTCAAGGTCTTATATTCGTGGTTGATAGCAACGACAGGGACCGAGT 299
||| ||||| |||||||| |||||||| || || || |||||||||||||| ||| ||||
Sbjct 352 CTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGACAGAGACAGAGT 411
Query 300 TGTGGAAGCGAGGGATGAGTTACATC-GCATGTTGAATGAGGATGAACTGAGGGATGCTG 358
||| || || || |||||| | || | | ||| |||||||||| || ||| | |||||||
Sbjct 412 TGTTGAGGCTAGAGATGAGCTCCA-CAGGATGCTGAATGAGGACGAGCTGCGTGATGCTG 470
Query 359 TCCTT-CTTGTGTTTGCAAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATA 417
| || ||||||||||| ||||| ||||||||||| || || ||||| || || |||||
Sbjct 471 TG-TTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAAATC 529
Query 418 ACTGATAAGCTTGGTCTTCACTCTCTTCGCCAACGCCATTGGTACATTCAAAGCACTTGT 477
|| ||||||||||| ||||| || || || || || ||||||||||| || ||||| |||
Sbjct 530 ACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCAGAGCACATGT 589
Query 478 GCCACATCTGGAGAAGGTCTCTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTACC 537
|||||||| || ||||| || |||||||| || || |||||||||||||||||||| |
Sbjct 590 GCCACATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGCCGGC 649
Query 538 AAGGTAA-ATAA 548
||||||| ||||
Sbjct 650 AAGGTAACATAA 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20718484827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5