BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14680.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940949 jgi|Araly1|940949|scaffold_601493.1 929 0.0
> Ahg940949 jgi|Araly1|940949|scaffold_601493.1
Length=578
Score = 929 bits (503), Expect = 0.0
Identities = 550/573 (96%), Gaps = 2/573 (0%)
Strand=Plus/Plus
Query 32 GAGAGAGTAGTCGAGTGAAACAATAATGGAGAGCGAGCCTACTCGAGTGATGGTGGCGGT 91
||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 8 GAGAGAG-AGTCG-GTGAAACTATAATGGAGAGCGAGCCGACTCGAGTGATGGTGGCGGT 65
Query 92 GAATGAATCGACTCTCAAAGGCTATCCACACGCGTCGATAAGTAGCAAAAAAGCATTCGA 151
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 66 GAATGAATCGACTCTCAAAGGCTATCCACACGCGTCGATTAGCAGCAAAAAGGCATTCGA 125
Query 152 GTGGACACTGAAGAAGATCGTTCGGTCCAATACCTCTGGCTTCAAGCTTCTCTTGCTCCA 211
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 126 GTGGACACTGAAGAGGATCGTTCGGTCCAATACCTCTGGTTTCAAGCTTCTCTTGCTCCA 185
Query 212 CGTTCAAGTTCAAGACGAAGACGGTTTTGATGACATGGACAGTATATATGCTTCCCCTGA 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CGTTCAAGTTCAAGACGAAGACGGTTTTGATGACATGGACAGTATATATGCTTCCCCTGA 245
Query 272 TGATTTCCGACAAATGAGGGAGCGTAACAAGGCTAAAGGACTTCACCTTCTTGAGTTTTT 331
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TGATTTCAGGGGAATGAGGGAGCGTAACAAGGCTAAAGGACTTCACCTTCTTGAGTTTTT 305
Query 332 CGTTAAGAAATGTCATGATATTGGGGTTGGGTGCGAGGCTTGGATCAGGAAAGGTGATCC 391
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 306 CGTTAACAAATGTCATGATATTGGGGTTGGGTGCGAGGCCTGGATCAGGAAAGGTGATCC 365
Query 392 CACAGAATTGATATGCCATGAAGTGAGGCGAGTCCGGCCAGATTTTCTGGTTGTGGGAAG 451
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 366 CACTGAAGTGATATGCCATGAGGTGAGGCGAGTCCGGCCAGATTTTCTGGTTGTGGGAAG 425
Query 452 TCGTGGTCTCGGCCCATTCCAAAAGGTATTTGTTGGAACAGTGAGTGAATTTTGTGTGAA 511
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 TCGTGGTCTCGGCCCATTCCAAAAGGTATTTGTTGGAACTGTGAGTGAATTTTGTGTGAA 485
Query 512 GCATGCAGAATGCCCAGTCATCACAATCAAACGCACTGCTGAAGAATCTCCACAAGATCC 571
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 486 GCATGCAGAATGCCCAGTCATCACAATCAAACGCAGTGCTGAAGAATCTCCACAAGATCC 545
Query 572 AGCTGATGACTAAATTTCAAAAGCAACGCAAAA 604
|||||||||||||||| | |||||||| |||||
Sbjct 546 AGCTGATGACTAAATTCCTAAAGCAACACAAAA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5