BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14690.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488311 jgi|Araly1|488311|fgenesh2_kg.6__1445__AT5G14690.1 1184 0.0
> Ahg488311 jgi|Araly1|488311|fgenesh2_kg.6__1445__AT5G14690.1
Length=757
Score = 1184 bits (641), Expect = 0.0
Identities = 730/770 (95%), Gaps = 18/770 (2%)
Strand=Plus/Plus
Query 6 TTTTTGTTGTAGTAGGCTTTTGTTTTGATGGAGGAAAACCCGCATCGAGTTTCACGTAGA 65
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TTTTGGTTGTAGTAGGCTTTTGTTTTGATGGAGGAAACCCCGCATCGAGTTTCACGTAGA 60
Query 66 AACCATGGCGGGACCCACTGTCAAAACGACGCCGTGGACGAAGAGAACCGTCGACGACGG 125
| |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||
Sbjct 61 ACCCATGGCGGGACCCACTGTCAAAACGACACCGTCGACGAAGAGAGCCGTCGACGACGG 120
Query 126 CA--T-AACCACCACACTCACGGCGACGAAGTCAAATGCTCCAGTAAGAGATGCCGATCG 182
|| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 121 CATTTCAACCACCACACTCACGGCAACGAACTCAAATGCTCCAGTAAGAGATGCCGATCG 180
Query 183 TGGGCGGCTGCGGCGATTGCTGACTGTGTAGCGCTTTGTTGCTGTCCATGTGCGATCATC 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGGCGGCTGCGGCGATTGCTGACTGTGTAGCGCTTTGTTGCTGTCCATGTGCGATCATA 240
Query 243 AACCTTCTTACTCTTACTCTCGTCAAAGTCCCGTGGATGATCGGACGGCGATGTCTCGGC 302
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AACCTTCTTACTCTCACTTTCGTCAAGGTCCCGTGGATGATCGGACGGCGATGTCTCGGC 300
Query 303 GGCGGCGGTCGGAATAAGAAGAAGCGGAGAG-TAATACACAGGAGGAAACGCCGCGGGAA 361
||||| |||||||||||| |||||||| | || |||||| ||||||||||||||||||
Sbjct 301 GGCGG---TCGGAATAAGAAAAAGCGGAG-GCTATTACACAAGAGGAAACGCCGCGGGAA 356
Query 362 TATCAACGGTGAAGATGAGTTTTATCATCATAATAACCATCACCGCCGGTTTGAGACAGC 421
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 TATCAACGGTGAAGATGAGTTTCATCATCATAATAACCATCACCGCCGGTTTGAGACAGC 416
Query 422 CGAGGAGGGT-GAGAAATGCGGCTGCGGCGGTGGCGGAGGAGGATGTTATGGCGGCGGAG 480
||||| ||| ||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 417 CGAGG-GGGACGAGAAATGCGGCTGCGGAGGTGTCGGAGGA---TGTTATGGCGGCGGAG 472
Query 481 ATTATGATGATCACCGGTTTGTGGTAGAGAGAGATGGGAGTTTAACGAaggaggaggagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ATTATGATGATCACCGGTTTGTGGTAGAGAGAGATGGGAGTTTAACGAAGGAGGAGGAGG 532
Query 541 aggaggagagAACGACGTCGTGTAAAGGAGAAGATCATGATGAGTCGCGAATAAGTGCAA 600
||||| | | |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 533 AGGAG-A-A-AACGACGTCGTGTAAAGGAGGAGATCATGATGAGTCGAGAATAAGTGCAA 589
Query 601 GAGTTGAAGCCGAGAGAGTGTGGTTAGAGTTGTATCAGATTGGTCATCTTGGATTTGGTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAGTTGAAGCCGAGAGAGTGTGGTTAGAGTTGTATCAGATTGGTCATCTTGGATTTGGTA 649
Query 661 GAGTCTCTTTCACTGGAATTCAATGATTGATCAATTTGTAGGATTTTTTAGTTATATTCG 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 650 GAGTCTCTTTCACTGGAATTCAATGATTGATCAATTTGTAGGATTTT--AGTTATATTCA 707
Query 721 AATAAATATAAAATGTGAATGTTTTAGTCTATGTGTTCTATTCTATGATA 770
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AATAAATATAAAATGTGAATGTTTTAGTCTATGTGTTCTATTCTATGATA 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5