BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14700.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488312 jgi|Araly1|488312|fgenesh2_kg.6__1446__AT5G14700.1 1941 0.0
> Ahg488312 jgi|Araly1|488312|fgenesh2_kg.6__1446__AT5G14700.1
Length=1438
Score = 1941 bits (1051), Expect = 0.0
Identities = 1343/1476 (91%), Gaps = 51/1476 (3%)
Strand=Plus/Plus
Query 1 GTGTATCTCTTTCTACCTTCTCTGAACCTATAGAGCCAACGAAACCAGAGGACAGTGAAC 60
|||||||||| |||||| ||||||||||||||||||||||||| || | || | | |
Sbjct 1 GTGTATCTCTCTCTACCGACTCTGAACCTATAGAGCCAACGAAA-CA-A-GA-A--G-AT 53
Query 61 AAAGAATTGTATAATTCGATCTCAACTCGTTCCTTTGTTGATTCTTTACTCCGACTATTA 120
|| | | | | | || | || |||| |||| |||||||||||| |||| ||
Sbjct 54 TCAG-A--GGA-CAGT-GAAC-AAAGAAGTTCATTTGCTGATTCTTTACTTCGAC---TA 104
Query 121 TGAGGATTGTACGTGCGACGGAGACGTTCTCGGCGGAGCTTAAAGAGTTCATGTGCGCCG 180
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 105 TGAGGATTGTACGTGCGACGGATACGTTCTCGGCGGAGCTTAAGGAGTTCATGTGCGCCG 164
Query 181 CTGTGCAAAGGAGGAAAGACGACGACGGATTCAGAGGCTCTCGTGGCGGTGGTAAATCTA 240
||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 165 CTGTGCAAAGGAGGAGAGACGACGACGGATTTAGAGGCTCTCGTGGTGGTGGTAAATCAA 224
Query 241 GAAATGCCATGGATCTTGATTCTGACGCCGGAAACAGATTGGTTTGTGTTACTGGTGGTG 300
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 225 GAAATGCCATGGATCTGGATTCTGACTCCGGAAACAGATTGGTTTGTGTAACTGGTGGTG 284
Query 301 TTTCTTACCTTGGTCGTGCCATTGTTAAACGTCTTCTTGTTCATGGATACTCCGTTAGAA 360
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 285 TTTCTTATCTTGGTCGTGCCATCGTTAAACGTCTTCTTGTCCATGGATACTCCGTTAGAA 344
Query 361 TCGTCGTTGATTGTCCAGAGGACAAAGAGAAAGTGAGTGAGATGGAAGCTGACGCTGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 345 TCGTCGTTGATTGTCCAGAGGACAAAGAGAAAGTGAGTGAGATGGAAGCCGACGCTGAAA 404
Query 421 CGGCGTCGTTTAGCAACATGATTACTTCAGTGGTTTCTCGATTAACAGAGATCGATAGCT 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 405 CGGCGTCGTTTAGCAACAGGATTACTTCAGTGGTTTCTCGATTAACAGAGATCGAGAGTT 464
Query 481 TAATTAAAGCGTTTGATGGTTGTGCTGGCGTTTTCCACACTTCTGCGTTTGTTGATCCTG 540
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 465 TGATTAAAGCGTTTGATGGTTGTGCTGGCGTTTTCCACACTTCTGCGTTTGTAGATCCTG 524
Query 541 CTGGAGTCTCTGGATATTCGAAATCAATGGCGGAGTTAGAAGCAAAAGTGAGCGAGAGTG 600
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 525 CTGGAATCTCTGGATATTCGAAATCAATGGCGGAATTAGAAGCAAAAGTGAGCGAGAATG 584
Query 601 TAATCGAAGCGTGTACAAGAACAGCCTCAGTGAGAAAATGTGTCTTCACATCATCTCTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TAATCGAAGCGTGTACAAGAACAGCCTCAGTGAGAAAATGTGTCTTCACATCATCTCTCT 644
Query 661 TAGCCTGCGCTTGGCaaaaaaaTCCCTGTAATAGTCTTGACCACTCTGTTATCAATGAAG 720
|||||||| |||||||||| ||| ||| || | |||||| ||||||||||||| ||||
Sbjct 645 TAGCCTGCACTTGGCAAAACAATACCTACAACAATCTTGATTACTCTGTTATCAACGAAG 704
Query 721 AAAGCTGGAGCGATGAACAACTCTGCATCGATAATAAGCTTTGGTATGCACTTGGAAAAC 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AAAGCTGGAGCGACGAACAACTCTGCATCGATAATAAGCTTTGGTATGCACTTGGAAAAC 764
Query 781 TAAAAGCCGAGAAAGCTGCGTGGAGAATAGCTGATTCAAAAGGATTAAAGCTTGCAACTA 840
| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 765 TCAAAGCCGAGAAAGCTGCGTGGAGAATCGCAGATTCGAAAGGATTAAAGCTTGCAACTA 824
Query 841 TATGTCCTGCTCTTATAACTGGTCCTGACTTCTTCAACCGTAACTCCACTTCAACCTTGG 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 825 TATGTCCTGCTCTTATAACTGGTCCTGACTTCTTCAACCGTAACTCCACTTCAACCTTAG 884
Query 901 CTTATCTCAAAGGAGCAAAAGAGATGTATAGTAACGGATTATTAGCGACAATGGATGTGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CTTATCTCAAAGGAGCAAAAGAGATGTATAGTAACGGATTATTAGCGACAATGGATGTGA 944
Query 961 ACAGGTTGGCTAAAGCTCACGTATGTTTGTGGGAAGGTTTGGGTAATAAAACTGCGTTTG 1020
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 945 ACAGGTTGGCTAAAGCTCACGTGTGTTTGTGGGAAGGTTTGGGTAATAAAACTGCGTTTG 1004
Query 1021 GTAGATACATTTGTTTCGACACCATTCTCTCTAGAGATGGTGCTGAAAAGCTTGCAAAAG 1080
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1005 GTAGATACATTAGTTTCGACACCATTCTCTCTAGAGATGGTGCTGAAAAACTTGCTAAAG 1064
Query 1081 ATATCGATGTTCAAATCGAAAAGATTTGCGGTAACAGCAACGATTCAGATGCAAACACAG 1140
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1065 ATATCGGTGTTCAAATCGAAAAGATTTGCGGTAACAGCAACGATTCAGACGCAAACGCAG 1124
Query 1141 AAACAGAAGCTTCTTTACAAATATCAGATAAAAAGCTATTAGATCTTATGTCAAGAACTC 1200
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1125 AAACAGATGCTTCTTTACAAATATCAGATAAAAAGCTTTTAGATCTTATGTCAAGAACTC 1184
Query 1201 TACGAAGTTGCTACCATGAGAGTTAGCTAGGCACGACGACAAAAATTAAACAGAGCAGTT 1260
||||||||||||||||||| |||||||||| || ||||| ||||| ||
Sbjct 1185 TACGAAGTTGCTACCATGAAAGTTAGCTAG--AC-ACGAC------------GAGCAATT 1229
Query 1261 CTAAGCTATTGACGTAACGTTTTGCTCTTATTCTTTTCTTCTTTT-A-AATTATGCTTTA 1318
||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 1230 CTAAGCTGTTGACGTGGTGTTTTGCTCTTATTCTTTTCTTCTTTTTATAATTATGCTTTC 1289
Query 1319 TTTAT-TTG--TTTAGTG-TAATGATAA--AT-CAT---TATGAAATaaaaaaaaTGAGA 1368
||| | || ||| | ||||||||| || ||| ||| ||||||||||| ||| |
Sbjct 1290 TTTTTGTTTAATTTTCTTATAATGATAATCATTCATCAATATCAAATAAAAAAA-TGATA 1348
Query 1369 ATCATTGTTATTTGTAATTGTACGAATGTGGTTTGCGTGGAGGGTGGTTGTTGTAAAGGG 1428
|||||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1349 ATCATTGTTATTTGTA------CGAATGTGGTTTGTGTGGAGGGAGGTTGTTGTAAAGGG 1402
Query 1429 C-GGTAGAGTTGGTGTTCGTGGAAAATTTATAAATT 1463
| |||||||||||| ||||| |||||||| ||||||
Sbjct 1403 CCGGTAGAGTTGGTATTCGTTGAAAATTTTTAAATT 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5