BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G14710.1

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325939 jgi|Araly1|325939|fgenesh1_pm.C_scaffold_6001159           621    2e-177


> Ahg325939 jgi|Araly1|325939|fgenesh1_pm.C_scaffold_6001159
Length=375

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 363/376 (97%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  134  atggaaagCTTGGACACTAATTTTCCTGTGCGCCATAGAAAGGTCTCGTTTGAAAGTAAG  193
            |||||||||||||||||||||||||| ||||||||||||||  |||| |||||||| |||
Sbjct  1    ATGGAAAGCTTGGACACTAATTTTCCGGTGCGCCATAGAAAAATCTCCTTTGAAAGCAAG  60

Query  194  GGAAACAAGACAGAGATTGTGATCTGCAGCTATGAAGATCATATCCTTATCATAGCAACA  253
            ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  61   GGAAACAAGACAGAGATTGTGATTTGCAGCTATGAAGATCATATCCTTGTCATAGCAACA  120

Query  254  CAGATTGGTGCCATGGGAACTATATTGCACGCAAGGAAGGAAGAAGGG-ATGTCTGTTGA  312
            |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  121  CAGATTGGAGCCATGGGAACTATATTGCACGCAAGGAAGGAAG-AGGGCATGTCTGTTGA  179

Query  313  ACCAACATTTAGTGTTTCAGTGATATTCGGAAAGCGAGACGAGCCAATGCTGACAGCAAC  372
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  180  ACCAACATTTAGTGTTTCAGTGATATTCGGAAAGCGAGATGAGCCAATGCTGACAGCAAC  239

Query  373  TGCTCGAAGACTCATTGAACACATAAGTTCTATTGTTCCCTCGAAGCCTCTGGTTCTCTC  432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TGCTCGAAGACTCATTGAACACATAAGTTCTATTGTTCCCTCGAAGCCTCTGGTTCTCTC  299

Query  433  ACTTGGTCTCAAAGATCATTCTTCGGAGACGTTGAAGGAAATAGTAGCGACAGTGATTGA  492
            |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  300  ACTTGGTCTCAAAGATCATTCTTCGGAGACATTGAAGGAAATAGTAGCGACGGTGATTGA  359

Query  493  GAATCGCCTTTGGTAA  508
            ||||||||||||||||
Sbjct  360  GAATCGCCTTTGGTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24436789797


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5