BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14720.1
Length=2843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488313 jgi|Araly1|488313|fgenesh2_kg.6__1447__AT5G14720.1 2128 0.0
> Ahg488313 jgi|Araly1|488313|fgenesh2_kg.6__1447__AT5G14720.1
Length=2623
Score = 2128 bits (1152), Expect = 0.0
Identities = 1296/1362 (95%), Gaps = 24/1362 (2%)
Strand=Plus/Plus
Query 1 CAGACGACAGAAAAGCTAAC--CACAAGAGGAGGAGAGAAACTCGATAACAAACAAGAGA 58
|||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1 CAGACGACAGAAAAGCTAACAACACAAGAGGAGGAGAGAAACTC---AA-TAAC------ 50
Query 59 AAGAGAAAGCGAGATTCTAAAATCTAATCTCGTGCTTCCAATTCAAATAATTTTGTCTCC 118
| || | ||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 51 ----G-AA-CAAGATTCTTTAATCTAATCTCGTGCTTCCAATTTAAATAATTTTGTCTCC 104
Query 119 TTAGCGGATCGATCGTAGATTATAAAGCTCCGCCGTCGCCTCCGCCGCAATCGACGGCGG 178
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 105 TTAGCGGATCGATTGCAGATTATCAAGCTCCGCCGTCGCCTCCGCCGCAATCGACGGCGG 164
Query 179 TGTCTACGTCGCTTTCGTTTCGTGCGTAACAGGAGGAGCAGCAGCAAAATAAGTCAGCTT 238
||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||
Sbjct 165 TGTCTACGTCGCTTTCGATTCGTGCGTAACAGGAGCAGCAGCAGCAGAAGAAGTCAGCTT 224
Query 239 AAGTAACGCCGTCTTTGATTTGACTTGAGATAAGTATT-TTGGTGATATGGCATTGATGA 297
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 225 AAGTAACGCCGCCTTTGATTTGACTTGAGATAAGT-TTGTTGGTGATATGGCATTGATGA 283
Query 298 TGTTTCCGCATTTGCTCGACGTTGACGAAAAGTAAAATGCTGGCGAATTGGAAGAAACCA 357
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 284 TGTTTCCGTATTTGCTCGGCGTTGAAGAAAAGTAAAATGCTGGCGAATTGGAAGAAACCA 343
Query 358 CATACAGATTGATGCTCTCTTCAGTCGACCTCTTTTGTAAATTTGTTGAAACTTACGGGG 417
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 344 CGCACAGATTGATGCTCTCTTCAGTCGACCTCTTTTGTATATTTACTGAAACTTACGGGG 403
Query 418 TCGAAGGTGTGTAGCATATATGCTATAAGAAGATTATAAAGTAAAAATTATGGAATCGGG 477
||||||||||||||| ||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct 404 TCGAAGGTGTGTAGC--ATATGCTTTAAGAAGATAAAAAAGTGAAAATTATGGAATCGGG 461
Query 478 TTCAGAGAAAAAGTTCCCTCTCAATGCAAAAGACTACAAGTTATATGAAGAAATTGGAGA 537
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTCAGAGAAAAAGTTTCCTCTCAATGCAAAAGACTACAAGTTATATGAAGAAATTGGAGA 521
Query 538 TGGTGTCAGTGCGACTGTGCATAGAGCTTTGTGTATACCGCTTAATGTGGTAGTTGCTAT 597
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 522 TGGTGTCAGTGCGACAGTGCACAGAGCTTTGTGCATACCGCTTAATGTGGTAGTTGCTAT 581
Query 598 CAAGGTTCTTGATCTGGAAAAGTGCAACAACGATCTGGATGGGATCCGGAGAGAGGTGCA 657
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 582 CAAGGTTCTTGATTTGGAAAAGTGCAACAACGATTTGGATGGGATCCGGAGAGAGGTGCA 641
Query 658 AACAATGAGTCTGATCAACCATCCAAATGTGTTGCAAGCTCATTGCTCATTTACCACCGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 642 AACAATGAGTCTGATCAACCATCCAAATGTGTTGCAAGCTCATTGCTCATTTACCGCCGG 701
Query 718 ACACCAGCTTTGGGTTGTGATGCCTTACATGGCTGGAGGATCTTGTCTCCATATAATTAA 777
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 702 ACACCAGCTTTGGGTTGTGATGCCTTACATGGCTGGAGGATCCTGTCTCCATATAATAAA 761
Query 778 GTCTTCCTATCCAGATGGATTTGAGGAACCTGTTATCGCTACTTTACTTCGTGAGACTCT 837
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTCTTCATATCCAGATGGATTCGAGGAACCTGTTATCGCTACTTTACTTCGTGAGACTCT 821
Query 838 GAAAGCTCTTGTATATCTTCATGCTCATGGGCATATCCACAGGGATGTGAAGGCTGGAAA 897
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 822 GAAAGCTCTTGTATATCTTCATGCTCATGGGCATATCCACAGGGATGTAAAGGCTGGAAA 881
Query 898 CATTTTATTGGATTCCAATGGTGCCGTTAAGTTAGCAGACTTTGGAGTATCAGCTTGCAT 957
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 882 CATTTTATTGGATTCCAATGGTGCCGTTAAGTTGGCAGACTTTGGAGTATCAGCTTGCAT 941
Query 958 GTTTGATACGGGAGATAGACAACGTTCCAGAAATACATTTGTTGGGACTCCATGCTGGAT 1017
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 GTTTGATACGGGAGATAGACAACGTTCCAGAAATACATTCGTTGGGACTCCATGCTGGAT 1001
Query 1018 GGCTCCTGAAGTCATGCAGCAACTACATGGATATGATTTCAAAGCAGATGTATGGTCATT 1077
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1002 GGCTCCTGAAGTCATGCAGCAACTACATGGTTATGATTTCAAAGCAGATGTATGGTCATT 1061
Query 1078 TGGAATAACAGCACTTGAATTGGCACATGGTCATGCCCCATTTTCCAAATATCCGCCAAT 1137
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1062 TGGAATAACAGCACTTGAACTGGCACATGGTCATGCCCCATTTTCTAAATATCCGCCAAT 1121
Query 1138 GAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGACTTGACTACGAGAGAGACAA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGACTTGACTACGAGAGAGACAA 1181
Query 1198 AAGATTCTCGAAAGCCTTCAAGGAAATGGTGGGTACATGCCTGGTGAAGGACCCAAAGAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AAGATTCTCGAAAGCCTTCAAGGAAATGGTGGGTACATGCCTGGTGAAGGACCCAAAGAA 1241
Query 1258 GCGTCCAACTTCAGAAAAGCTTTTGAAA-CACCCTTTCTTCAAACATGCACGTCCAGCTG 1316
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1242 GCGTCCAACTTCAGAAAAGCTTTT-AAAGCACCCTTTCTTCAAACATGCACGTCCAGCTG 1300
Query 1317 ATTACCTGGTTAAAACAATTCTAAATGGTCTTCCTCCATTAG 1358
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 ATTACCTGGTTAAAACAATTCTAAATGGTCTTCCTCCATTAG 1342
Score = 1755 bits (950), Expect = 0.0
Identities = 1032/1073 (96%), Gaps = 0/1073 (0%)
Strand=Plus/Plus
Query 1441 GCAAGAGTATATAAGGGGAATAAGCGCTTGGAATTTCAATCTCGAGGACCTAAAAACTCA 1500
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GCAAGAATACATAAGGGGAATAAGCGCTTGGAATTTCAATCTCGAGGACCTAAAAACTCA 1421
Query 1501 AGCTGCCCTTATTTCAGATGATGATACTTCACATGCTGAAGAGCCCGATTTCAACCAAAA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 AGCTGCCCTTATTTCAGATGATGATACTTCACATGCTGAAGAGCCCGATTTCAACCAAAA 1481
Query 1561 GCAATGTGAAAGACAGGATGAATCTGCTCTTTCCCCTGAAAGGGCTAGCAGCTCAGCAAC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 GCAATGTGAAAGACAGGATGAATCTGCTCTTTCCCCTGAAAGGGCTAGCAGCTCAGCAAC 1541
Query 1621 AGCTCCTAGTCAAGATGACGAACTGAATGATATTCATGATTTAGAGAGTTCTTTCGCCTC 1680
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1542 AGCTCCTAGTCAAGATGACGAACTGAACGATATTCATGATTTAGAGAGTTCTTTCGCCTC 1601
Query 1681 ATTTCCAATCAAACCTCTTCAAGCACTAAAAGGCTGCTTTGATATCAGTGAGGACGAGGA 1740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1602 ATTTCCAATCAAACCTCTTCAAGCACTCAAAGGCTGCTTTGATATCAGTGAGGACGAGGA 1661
Query 1741 TAATGCAACTACTCCTGATTGGAAAGATGCTAATGTAAATTCTGGACAACAGCTTTTAAC 1800
|||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 1662 TAATGCAACTACTCCTGATTGGAAAGATGCAAATTTAAATTCTGGACAACAGCATTTAAC 1721
Query 1801 AAAGGCTTCCATTGGATCTTTGGCCGAAACCACGAAAGAAGAGGACACTGCAGCACAAAA 1860
||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 1722 AAAGGCTTCCATTGGATCTCTGGCTGATACCACGAAAGAAGAAGACACTGCAGCACAAAA 1781
Query 1861 CACTTCTTTACCACGTCATGTCATTTCTGAACAGAAAAAATATTTGAGCGGTTCAATTAT 1920
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1782 CACTTCTTTACCACGTCATGTCATTTCCGAACAGAAAAAATATTTGAGCGGTTCAATTAT 1841
Query 1921 ACCAGAGAGTACTTTCTCTCCAAAAAGAATCACATCTGATGCTGATAGGGAGTTTCAACA 1980
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1842 ACCAGAGAGTACTTTCTCTCCAAAAAGAATCACATCTGAGGCTGACAGGGAGTTTCAACA 1901
Query 1981 GCGTAGATATCAAACAGAGCGGAGCTACAGCGGATCATTATACCGCACCAAGAGAGATTC 2040
||||||||||||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 1902 GCGTAGATATCAAACAGAGCGGAGCTACAGCGGATCATTGTATCGCACAAAAAGGGATTC 1961
Query 2041 CGTGGACGAGACGTCAGAAGTCCCGCATGTGGAGCACAAGGGACGGTTTAAGGTCACATC 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1962 TGTGGACGAGACGTCAGAAGTCCCGCATGTGGAGCACAAGGGACGGTTTAAGGTTACATC 2021
Query 2101 AGCAGATCTGAGTCCCAAGGGATCTACAAACTCTACATTCACACCATTTAGTGGTGGTAC 2160
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2022 AGCAGATCTAAGTCCCAAGGGATCTACAAACTCTACATTCACACCATTTAGTGGTGGTTC 2081
Query 2161 AAGCAGCCCTAGTTGCCTCAATGCTACAACCGCCTCAATCCTCCCATCAATTCAGTCGAT 2220
||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2082 AAGCAGCCCGAGTTCCCTCAATGCGACAACCGCCTCAATCCTTCCATCAATTCAGTCGAT 2141
Query 2221 TTTGCAGCAAAATGCTATGCAACGGGAAGAGATTTTGAGACTAATCAAATACTTGGAGCA 2280
|||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2142 TTTGCAGCAAAACGCCATGCAACGGGAAGAGATTTTGAGACTAATCAAATACGTGGAGCA 2201
Query 2281 AACCTCTGCCAAGCAACCTGGATCGCCTGAGACGAACGTCGATGACCTATTGCAGACGCC 2340
|||||||||||||||||||||||| || ||||| || |||||||| ||| ||||||| ||
Sbjct 2202 AACCTCTGCCAAGCAACCTGGATCCCCCGAGACAAATGTCGATGAGCTACTGCAGACACC 2261
Query 2341 TCCTGCAACCTCACGAGAGAGAGAACTTCAGTCTCAAGTCATGCTACTACAACAAAGCTT 2400
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2262 TCCTGCAACGTCACGAGAGAGAGAACTTCAGTCCCAAGTGATGCTACTACAACAAAGCTT 2321
Query 2401 TTCCAGCCTAACAGAAGAACTAAAGAAACAGAAGCAGAAAAATGGGCAGTTGGAGAATCA 2460
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 TTCGAGCCTAACAGAAGAACTAAAGAAACAGAAGCAGAAAAATGGGCAGTTGGAGAATCA 2381
Query 2461 GTTGAACGCATTAACACACAGAAATGATTGAGTCTCAAAAGCCATCGAGACAA 2513
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 GTTGAACGCATTAACACACAGAAATGATTGAGTCTCAAAAGCCATCGAGACAA 2434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107300220165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5