BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14730.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488314 jgi|Araly1|488314|fgenesh2_kg.6__1448__AT5G14730.1 1306 0.0
> Ahg488314 jgi|Araly1|488314|fgenesh2_kg.6__1448__AT5G14730.1
Length=1216
Score = 1306 bits (707), Expect = 0.0
Identities = 1090/1260 (87%), Gaps = 86/1260 (7%)
Strand=Plus/Plus
Query 57 AGCACATCATGAGTACAATGCAAGATTTATCTTCTACTGTGTCGTTTAGCCCTAGCTTCA 116
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 23 AGCACATCATGAGTACAATGCAAGATTTATCTTCTACGGTGTCGTTTAGCCCCAGCTTCA 82
Query 117 GTTTCTACGCCTCCGGTGACCTAGTCGAAACCGCCGTTAGAGTTATACGTGAGTCCGAGA 176
|||||||||||||||||||||| || ||| |||||||||||||| |||||||||||||||
Sbjct 83 GTTTCTACGCCTCCGGTGACCTTGTTGAAGCCGCCGTTAGAGTTGTACGTGAGTCCGAGA 142
Query 177 GTTATTATTCCGTTAAAGTTGACGGCGAAAACGACAAAGAATTCGAGTTCGAAACATTAC 236
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 143 GTTATTCTTCCGTTAAAGTTGACGGAGAAAACGACAAAGAATTCGAGTTCGAAACATTAC 202
Query 237 CGTTAGGTGACGAGAGCCTCTTTCATTTCTCAACGA-TGACGACGACTTTTAAGCGCTCT 295
||||||||||||||||| |||| |||||| | |||| | ||| |||||||||||||||||
Sbjct 203 CGTTAGGTGACGAGAGCTTCTTCCATTTCCCGACGACT-ACGGCGACTTTTAAGCGCTCT 261
Query 296 TCCGACGACGATGACGTGGCAGACGATCGAGTCACCTCGAAGAATCTTTTCTACGGTGGA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 262 TCCGACGACGATGACGTGGCAGACGATCGAGTCACCTCGAAGAATCTTTTCTACGATGGC 321
Query 356 TGGAGTGTTGATCC-TC-C-ATCTCTAACTTCGCCGTCGGAATCACTTTCATCGTCGGAT 412
|||||| ||||||| || | ||||| | |||| ||||| |||||| |||||||||||||
Sbjct 322 TGGAGTCTTGATCCATCTCCATCTCCACCTTCTCCGTCACAATCACATTCATCGTCGGAT 381
Query 413 TCTGACGATTCGGAAAACATTTCTCCGAGCAAATTCTACTGTTTCTGGAGTCCGATCAGA 472
|||||||||||||| ||| |||| || ||| || ||||||||||||||||||||
Sbjct 382 TCTGACGATTCGGAGAACCTTTC-CC---CAAG--CT---GTTTCTGGAGTCCGATCAGA 432
Query 473 TCCCCGGCTAGAGACGATAGCTTGAAGAGTAAAG-G-A--TCTTC--G--A---GA--CG 519
|| ||||| |||| |||||||||||| || ||| | | ||||| | | || ||
Sbjct 433 TCTCCGGCGAGAGGGGATAGCTTGAAG-GTTAAGAGTAAATCTTCTAGCGAACCGAGACG 491
Query 520 GTGTCGTATAAAGGAATTTCTGAGGAGAAGCCACAGCGACGGAGCCGTTTCGACCGTGAG 579
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 492 GTGTCGTATAAAGGATTTTCTGAGGAGAAGCCACAGCGACGGAGCCGTTTCGACCGCGAG 551
Query 580 CGCAACTAAACGGTGCAGTTTCAAGGATCTTCTAAGGAGAAGCCACAGCGATGGCGGCGG 639
|||| | |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 552 CGCATCCAAACGGTGCAGTTTCAAGAATCTTCTGAGGAGAAGCCACAGCGACGGCGGCGG 611
Query 640 CGAGGGATCTTCGATTTCGACGAGTGGAAACGGCTCTCTGGTAGTGAAAGGGAGGAATAA 699
| ||| ||||||| ||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 612 CCAGGAATCTTCGGTTTCGACAAGTGGAAACGGCTCGCCGGTAGTGAAAGGGAGGAATAA 671
Query 700 AACGGCGGCGTATAAGCCTGATGTGGATAAGAGAAGAAAGTCTTACTTACCTTACAGGCA 759
||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 672 AACGGCGTCGTATAAGCCTGAAGTGGATAAGAGAAGAAAGTCTTACCTACCTTACAGGCA 731
Query 760 AGATTTGATCGGCGTTTTCGCCGGGATGGGTAGATTCCGTAATTAACGAATGTTTGATTA 819
||||||||||||||||||||||||||| | ||||||||| ||||||| | || |
Sbjct 732 AGATTTGATCGGCGTTTTCGCCGGGATAAGCAGATTCCGTCATTAACG---G----AT-A 783
Query 820 TTTCCTAATTTTATTATTTAAGTGTGCATATTCACAAAGAGGTCCTCGTT-TGATTTTTA 878
||| || || ||| || | | | || || || ||||||| ||| || | |
Sbjct 784 TTT--TA-TT--ATT-TT-A--T-T-CA----CA-AAT-AGGTCCTTGTTATGCCTATCG 826
Query 879 ATTTTCTCTTTTGACCATGTAATACTTTTTGGTGATATTAAATTCACTTGTGttttttgt 938
||||||| |||||||||||||| ||||||||||| |||||||||| || | | |
Sbjct 827 ATTTTCTTTTTTGACCATGTAAAACTTTTTGGTGCTATTAAATTC--TT-T-T-----G- 876
Query 939 cttttttacttttCCACTGAAATGTTGTGCAAAGTGTAAGACTTTCGAAG-AAATAGAGA 997
|||||||||||||| ||| || || | | ||||| ||| |||||||||
Sbjct 877 -------ACTTTTCCACTGAA-TGT-GT--AA-G---A---CTTTC-AAGGAAATAGAGA 917
Query 998 ATATT-TTAACGAAGGGGATCGTTTTGTCCAGTTGCATTCTTGAAGAAATCAATGATCTC 1056
|| || || |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 918 AT-TTGTTCACGAAGGGGACCGTTTTTTCCAGTTGCATTCTTGAAGAAATCAATGATCTC 976
Query 1057 GGTGATACAACAAGAGTAAGAACTCTCTGGTGATTCATTGTCACAAGCTCTTCAGTTCTC 1116
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 977 GGTGATGCAAGAAGAGTAAGAACTCTCTGGTGATTCATTGTCACAAGCTCTTCAATTCTC 1036
Query 1117 GGTCTAGGTCAGTTTCCAATGTGCTAATTAGGTCTTTAGTTAGGGTTTAGTAGTTTAAAC 1176
|||||| ||| ||||||||||||| ||||||| ||| ||||||||||||||| ||||||
Sbjct 1037 AGTCTAGATCAATTTCCAATGTGCTGATTAGGTATTTGGTTAGGGTTTAGTAGATTAAAC 1096
Query 1177 AGGGGATTCTAACATAGACTATAGCTTTGATGCATGTATATCTTGTTAACCAAGAATGAT 1236
||| ||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 1097 AGGAGATTCTAACATAGACCATAGCTTTGATGCCTGTTTATGTTGTTAACCAAGAATGAT 1156
Query 1237 GGTGGCTATTTAACAGGAAAAGATTCGGTGTTAACTCAGTTTGGTAATAGTTTTCTGATG 1296
|||||||||||||||| ||||| || ||||||| |||||||||||| ||||||||||||
Sbjct 1157 TGTGGCTATTTAACAGGGAAAGAATCAGTGTTAAGTCAGTTTGGTAACAGTTTTCTGATG 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5