BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14740.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2 1875 0.0
Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2 821 0.0
> Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2
Length=1407
Score = 1875 bits (1015), Expect = 0.0
Identities = 1222/1315 (93%), Gaps = 41/1315 (3%)
Strand=Plus/Plus
Query 207 TAATCTGTACAAAGATGTTGTGTTCTCATAAAAAATTCAA--TTTTGTAAAGAAGCTCTA 264
|||||||||||||||||||||| ||||||| | | ||||| ||||||||| |||||| |
Sbjct 101 TAATCTGTACAAAGATGTTGTGCTCTCATATACAGTTCAATTTTTTGTAAACAAGCTCAA 160
Query 265 CATGTTCCT-TGCTCTGTAAACATGGTCCCCTTTTGGACTACAGTTTCTCGAAATGGCTC 323
|||||| || |||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 161 CATGTT-CTGTGCTCTGTAAACTTGGTCCCCTTTTGGGCTACATTTTCTCGAAATGGCTC 219
Query 324 ATCAGACTCAGAGACGACTCTC-CAATCTGCTTCAAAAGCCACAAAACAGTATAAATATC 382
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 220 ATCAGACTCAGAGACGACTCTCTC-ATCTGCTTCAGAAGCCACAAAACAGTATAAATATC 278
Query 383 CTTCTCTTCGTCC---CTCTCATCGCCTGTCTCTCCTCTTCCTCTTCCCGTTCCATTTAT 439
||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 279 CTTCTCTTCGTCCATTATCTCATCGCCTGTCTCTCCTCTTCCTCTTCTCGTTCCGTTTAT 338
Query 440 CCGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAG-C--CACTTCAAACTT-GAACT- 494
||||||||||||||||| |||| |||||||||||||| | |||||||| || | | |
Sbjct 339 CCGCAAACGGAGCTTGTGTTCGTTGCACCTGCTTCAGTCATCACTTCAATTTTGGTA-TA 397
Query 495 G-AGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 553
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GAAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 457
Query 554 TTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGC 613
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 458 TTGAGAAGGATGAGCTGAAGGATGTAGCTGCGGCCAAAGTGAAAAAGATCACCGCGGAGC 517
Query 614 TTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCCGTCGAACGAATTAAGGAAG 673
||||| ||| |||||| || |||| ||| ||||| |||||||||||||||||||||||||
Sbjct 518 TTCAGACAGTCTCGTCGTCCGACAACAAGTCTTTCGATCCCGTCGAACGAATTAAGGAAG 577
Query 674 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCTCG 733
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 578 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAGCTCG 637
Query 734 CCAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCAT 793
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 638 CTAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTGCCCAT 697
Query 794 CACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 853
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 757
Query 854 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCT 913
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 758 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGCTGTCT 817
Query 914 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 877
Query 974 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGACTTCATAGAGGATTGGGTCA 1033
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 878 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGATTTCATAGAGGATTGGGTGA 937
Query 1034 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAAG 1093
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 938 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAGG 997
Query 1094 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATTGACAT 1153
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 998 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTATTGACAT 1057
Query 1154 ATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1213
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1117
Query 1214 ACTTTGTTAATGGCTCCTTTGAGCTTTGGGAGCTCCAGTTTGGAATTTCCCCCGTTCATT 1273
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1118 ATTTTGTTAATGGCTCCTTTGAGCTTTGGGAACTCCAGTTTGGAATTTCACCCGTTCATT 1177
Query 1274 CTATATGAACTAacacatcaccatcaccatcgctaccaccacca---t---ca-ca-aa- 1324
|||||||||||||||||||||||||||| |||| |||||||||| | || || ||
Sbjct 1178 CTATATGAACTAACACATCACCATCACCGTCGCCACCACCACCACCGTGATCATCACAAG 1237
Query 1325 catcat-catc---gtcgtcatcatcatgatcagcatcttcatATATA-A-AT-----GT 1373
|||||| |||| ||||||||||||||||||| |||| ||||||||| | || ||
Sbjct 1238 CATCATGCATCATCGTCGTCATCATCATGATCACCATCATCATATATATATATATAATGT 1297
Query 1374 TTTACTCTTATTTAATTGCTACTTGTAATGGTATACATTTACTTGCGATGAGCTTCTTTT 1433
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 1298 TTTACTCTTATTTAATTGCTGTTTGTAATGG-A--CATTTACTTGCGATGAGCTTCTTTT 1354
Query 1434 CCTTCATTATCCAGTTATAAAATAAATAAATAAATCATGTTTACTTTCACAGATA 1488
||||||||||||| |||||||||||||||| || |||| |||| |||||||||||
Sbjct 1355 CCTTCATTATCCACTTATAAAATAAATAAA-AA-TCATCTTTATTTTCACAGATA 1407
> Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2
Length=1314
Score = 821 bits (444), Expect = 0.0
Identities = 655/756 (87%), Gaps = 17/756 (2%)
Strand=Plus/Plus
Query 497 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 555
|||| |||||||| ||| |||| ||||| || || |||||||||||||||||||||||
Sbjct 370 GAAGAGATGGGAAGCGACGCATACGAAGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 429
Query 556 GAGAAGGATGATCTGAAGGA-TGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGCT 614
|||||||| || || || || || || ||||| |||||| || |||||||||||| |||
Sbjct 430 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGGCAAAGGTGGAGCAGATCACGGCGGCGCT 488
Query 615 TCAGGCAGCCT-CGTCATCGGAC-AGCAAATCTTTTGATCCCGTCGAACGA-ATTAAGGA 671
|||| ||| | | || || ||| || ||| |||| || ||||| ||| | |||||| |
Sbjct 489 TCAGACAG-GTACTTCGTCCGACAAG-AAAGCTTTCGACCCCGTTGAA-AACATTAAGCA 545
Query 672 AGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCT 731
|||||| ||| |||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 546 GGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAGCT 605
Query 732 CGCCAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCC 790
|| |||| |||||||| || ||||||||||||||||| |||||||||||||| ||||| |
Sbjct 606 CG-CAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCGTGTTCGGACTCACGTGTGTGTC 664
Query 791 CATCACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATA 850
|||||||||| || ||||| || || ||||||||||||||||| ||||| || ||||| |
Sbjct 665 CATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAACA 724
Query 851 TGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTG 910
||||||||||||| |||||||||||||| | || |||||||| |||||||||||||| |
Sbjct 725 TGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGCGG 784
Query 911 TCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCA 970
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 785 TCTTGCACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGATCA 844
Query 971 AGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGACTTCATAGAGGATTGG 1029
| ||||||||||| ||||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct 845 AAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACTGG 903
Query 1030 GTCAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCATT 1088
|||||||||||||||||||| |||||||| ||| | ||||| | || | |||||| ||
Sbjct 904 GTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCCTT 962
Query 1089 TGAAGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATT 1148
|||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 963 TGAAGATCAATGTGGCCGATGTGAAAGGGAGGCAGTGAATGTTTCATTAGCAAACCTATT 1022
Query 1149 GACATATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTA 1208
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1023 GACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGCTA 1082
Query 1209 CTATGACTTTGTTAATGGCTCCTTT-GAGCTTTGGG 1243
||||||||| |||| || | |||| ||||||||||
Sbjct 1083 CTATGACTTCATTAAGGG-TGCTTTTGAGCTTTGGG 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5