BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14750.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488320 jgi|Araly1|488320|fgenesh2_kg.6__1454__AT5G14750.1 1347 0.0
> Ahg488320 jgi|Araly1|488320|fgenesh2_kg.6__1454__AT5G14750.1
Length=823
Score = 1347 bits (729), Expect = 0.0
Identities = 796/826 (96%), Gaps = 13/826 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAAGAAAGTAAGTAGTAGTGGTGACGAAGGAAACAATGAGTACAAGAAAGGTTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAAGAAAGTAAGTAGTAGTGGTGACGAAGGAAACAATGAGTACAAGAAAGGTTTA 60
Query 61 TGGACAGTAGAAGAAGACAAAATCCTCATGGATTATGTCAAAGCTCATGGCAAAGGTCAC 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TGGACAGTAGAAGAAGACAAGATCCTCATGGATTATGTCAAAGCTCATGGCAAAGGCCAC 120
Query 121 TGGAATCGTATTGCCAAAAAGACTGGTTTAAAGAGATGTGGAAAGAGTTGTAGATTGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAATCGTATTGCCAAAAAGACTGGTTTAAAGAGATGTGGAAAGAGTTGTAGATTGAGG 180
Query 181 TGGATGAATTATCTCAGCCCTAATGTGAAAAGAGGCAATTTCACCGAGCAAGAAGAGGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGATGAATTATCTCAGCCCTAATGTGAAAAGAGGCAATTTCACCGAGCAAGAAGAGGAT 240
Query 241 CTTATCATTAGGCTCCACAAGTTGCTTGGTAATAGGTGGTCTTTAATTGCTAAAAGAGTG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTATCATTAGACTCCACAAGTTGCTTGGTAATAGGTGGTCTTTAATTGCTAAAAGAGTG 300
Query 301 CCGGGTCGAACGGATAATCAAGTGAAGAACTATTGGAACACGCATCTTAGTAAGAAACTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGGTCGAACGGATAATCAAGTGAAGAACTATTGGAACACGCATCTTAGTAAGAAACTC 360
Query 361 GGAATCAAAGATCAGAAAACCAAACAGAGCAATGGTGATATTGTTTATCAAATCAATCTC 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGATCAAAGATCAGAAAACCAAACAGAGCAATGGTGATATTGTTTATCAAATCAATCTC 420
Query 421 CCGAATCCTACCGAAACATCAGAAGAAACGAAAATCTCGAATATTGTCGATAACAATAAT 480
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 CCGAATCCTACCGAACCATCAGAAGAAACGAAAATCTCGAATATTGGCGCTAACAATAAT 480
Query 481 ATCCTCGGAGATGAAATTCAAGAAGATCATCAAGGAAGTAACTACTTGAGTTCACTTTGG 540
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATTCTCGGGGATGAAATTCAAGAAGACCATCAAGGAAGTAACTACTTGAGTTCACTTTGG 540
Query 541 GTTCATGAGGATGAGTTTGAGCTTAGCACACTCACCAACATGATGGACTTTA-TAGATGG 599
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 541 GTTCATGAGGATGAGTTTGAGCTTAGCACACTCACCAACATGATGGATTTTACT-GATGG 599
Query 600 ACACtgtttttgatgtgttttctgcttttgttattttagtattcgtttatg--t-ttt-g 655
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
Sbjct 600 ACACTGTTTTTGATGTGTTT-CTGCTTTTGTTATTTTAGTATTCGTTTATGCATGTTTTG 658
Query 656 ttattttCAAAGCTGATCAAACACTAATACATCAACAGTCTTAGATTAAAAGTTGTTGAT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTATTTTCAAAGCTGATCAAACACTAATACATCAACAGTCTTAGATTAAAAGTTGTTGAT 718
Query 716 GTGGTAGTGTATGATTGGCTAAGTCTATTAATTAGGTGAACTTTCTTGGGTTAACTCTAA 775
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 719 GTGGTAGTGTATGATTGGCTAAGTCTTTTAATTAGGTGTACTTTCTTGGGTTAACT-TAA 777
Query 776 -TGTATATGCTTAAAAACTCTAT----ATGCATCGATTAATGTTTT 816
|||||||||||| |||||||| |||||||||| ||||||||
Sbjct 778 ATGTATATGCTTAGCAACTCTATCTCTATGCATCGATAAATGTTTT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5