BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14760.1
Length=2389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488323 jgi|Araly1|488323|fgenesh2_kg.6__1457__AT5G14760.1 3241 0.0
> Ahg488323 jgi|Araly1|488323|fgenesh2_kg.6__1457__AT5G14760.1
Length=2334
Score = 3241 bits (1755), Expect = 0.0
Identities = 1923/2004 (96%), Gaps = 12/2004 (1%)
Strand=Plus/Plus
Query 396 CAAATCCATTCAAAGAGCCCTCTTGGTCAAGTGGGGTATTTAAGGCTCTAAAAGCTGAGA 455
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 333 CAAATCCATTCAAAGAGCCCTCTTGGTCAAGTGGCGTATTTAAGGCTCTAAAAGCTGAGA 392
Query 456 GATGTGGTTGTTACTCTCGTGGTATTTCCCCCATCAGTGAGACCTCAAAA-C-----C-- 507
||||||||||||||||||||||| |||| |||||| |||| ||||||| | |
Sbjct 393 GATGTGGTTGTTACTCTCGTGGTGTTTCTGCCATCACCGAGAGCTCAAAACCTTGTACAA 452
Query 508 -TATCAGGGCTGTTTCGGTATCTTCTTCAACAAAGTATTATGATTTCACTGTGATTGGTA 566
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 453 GTATCAGGGCTGTTTCGGTATCCTCTTCAACAAAGTATTATGATTTCACTGTGATTGGCA 512
Query 567 GTGGAGTAGCGGGTCTGCGTTATGCTTTAGAAGTTGCAAAGCAAGGAACAGTCGCAGTGA 626
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 513 GTGGAGTTGCGGGTCTGCGTTATGCTTTAGAAGTTGCAAAGCAAGGAACAGTGGCTGTGA 572
Query 627 TTACCAAAGATGAGCCTCATGAGAGTAACACAAACTATGCTCAAGGTGGTGTTAGTGCTG 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 573 TTACCAAAGATGAGCCTCATGAGAGTAACACAAACTATGCTCAAGGTGGTGTTAGTGCAG 632
Query 687 TGTTATGCCCTTTGGATTCTGTTGAAAGTCATATGCGGGACACTATGGTCGCTGGTGCTC 746
|||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||
Sbjct 633 TGTTATGCCCTTTGGATTCTGTTGAAAGTCATATGCAGGACACAATGGTTGCCGGTGCTC 692
Query 747 ATCTTTGTGATGAAGAAACCGTAAGAGTTGTGTGTACTGAAGGGCCTGAAAGGATTCGTG 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ATCTTTGTGATGAAGAAACCGTAAGAGTTGTGTGTACTGAAGGGCCTGAAAGGATTCGTG 752
Query 807 AACTGATTGCAATGGGAGCATCATTTGATCACGGCGAGGATGGAAATTTGCATTTGGCCA 866
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 753 AACTGATTGCGATGGGAGCATCTTTTGATCACGGCGAGGATGGAAATTTGCATTTGGCAA 812
Query 867 GAGAGGGTGGTCACTCGCATTGTAGGATCGTTCACGCTGCTGATATGACAGGAAGAGAGA 926
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 813 GAGAGGGTGGTCATTCGCATCGTAGGATCGTTCACGCAGCTGATATGACAGGAAGAGAGA 872
Query 927 TTGAGAGAGCTTTACTTGAAGCTGTACTTAATGATCCCAACATATCTGTCTTCAAACACC 986
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TTGAGAGAGCTTTGCTTGAAGCTGTACTTAATGATCCCAACATATCTGTCTTCAAACACC 932
Query 987 ATTTTGCAATCGATCTGCTCACTTCTCAGGATGGCTTGAACACAGTTTGTCATGGTGTGG 1046
|||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 933 ATTTCGCAATCGATCTGCTCACTTCTCAGGTTGGTTTGAACACAGTTTGTCATGGTGTTG 992
Query 1047 ACACTTTGAATATCAAAACTAATGAGGTAGTACGCTTTATATCGAAGGTGACATTGCTTG 1106
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ACACTTTGAATATCAAAACAAATGAGGTAGTACGCTTTATATCGAAGGTGACATTGCTTG 1052
Query 1107 CTTCAGGTGGAGCTGGGCATATCTATCCATCAACCACAAATCCTCTGGTGGCTACTGGAG 1166
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1053 CTTCAGGTGGAGCTGGGCATATCTATCCATCAACCACAAATCCTCTGGTCGCTACTGGAG 1112
Query 1167 ATGGGATGGCGATGGCTCATCGAGCTCAAGCTGTGATCTCAAATATGGAATTTGTGCAGT 1226
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 ATGGGATGGCTATGGCTCATCGAGCTCAAGCTGTGATCTCAAATATGGAATTTGTGCAGT 1172
Query 1227 TTCATCCTACTGCCCTAGCCGACGAAGGTCTTCCCATCAAACTACAAACTGCTAGGGAAA 1286
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||
Sbjct 1173 TTCATCCTACTGCCCTAGCTGACGAAGGTCTTCCCATCAAACCACAAACCGCTAGAGAAA 1232
Query 1287 ACGCGTTCCTCATCACCGAGGCGGTGAGAGGTGATGGTGGCATCCTCTATAATCTAGGAA 1346
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1233 ACGCGTTCCTCATCACCGAGGCCGTGAGAGGTGATGGTGGCATCCTCTACAATCTAGGAA 1292
Query 1347 TGGAGCGATTCATGCCTGTTTACGATGAACGAGCTGAGCTTGCTCCAAGAGACGTGGTTG 1406
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1293 TGGAGCGATTCATGCCCGTTTACGATGAACGAGCTGAGCTTGCTCCTAGAGACGTGGTTG 1352
Query 1407 CAAGAAGTATTGATGACCAGCTTAAGAAACGAAACGAAAAGTATGTGTTACTTGACATAA 1466
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1353 CAAGAAGCATTGATGACCAGCTTAAGAAACGGAACGAAAAGTATGTGTTACTTGACATAA 1412
Query 1467 GCCATAAGCCAAGAGAAAAGATTCTTGCCCATTTCCCGAACATAGCTTCTGAATGTCTTA 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GCCATAAGCCAAGAGAAAAGATTCTTGCCCATTTCCCGAACATAGCTTCTGAATGTCTTA 1472
Query 1527 AACACGGTCTGGATATCACCCGTCAGCCTATTCCGGTTGTCCCTGCAGCCCATTACATGT 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AACACGGTCTGGATATCACCCGTCAGCCTATTCCGGTTGTCCCTGCAGCCCATTACATGT 1532
Query 1587 GTGGAGGAGTTCGTGCTGGTTTACAAGGCGAAACCAATGTCCTTGGATTGTTTGTAGCAG 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GTGGAGGAGTTCGTGCTGGTTTACAAGGCGAAACCAATGTCCTTGGATTGTTTGTAGCAG 1592
Query 1647 GTGAAGTAGCATGTACAGGCCTCCACGGGGCAAATCGTCTTGCTAGTAACTCGCTTTTAG 1706
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1593 GTGAGGTAGCGTGTACCGGCCTCCACGGGGCAAATCGTCTTGCTAGTAACTCACTTTTAG 1652
Query 1707 AAGCTCTGGTTTTCGCGAGACGGGCTGTTCAGCCTTCGACTGAGCTCATGAAACGCACAA 1766
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 AAGCTCTGGTTTTCGCAAGACGGGCTGTTCAGCCTTCGACTGAGCTCATGAAACGCACAA 1712
Query 1767 GACTTGATGT-ATGCGCATCAGAGAAATGGACAAGGCCTGTTGTTGCGACAGCTAGATTG 1825
|||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1713 GACTTGATGTCA-GCGCATCAGAGAAATGGACAAGGCCTGTTGTTGCAACAGCTAGATTG 1771
Query 1826 CTAGGAGATGAAGTAATAGCAAAGATTATAGCTTTGACTAAAGAAGTGAGAAGAGAGCTT 1885
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TTAGGAGATGAAGTAATATCAAAGATTATAGCTTTGACTAAAGAAGTGAGAAGAGAGCTT 1831
Query 1886 CAGGAGGTAATGTGGAAGTATGTTGGTATTGTCAGATCGACAATTCGGCTCACCACTGCT 1945
||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1832 CAGGAAGTGATGTGGAAGTATGTTGGTATTGTCAGATCGACCATTCGGCTCACCACTGCC 1891
Query 1946 GAGAGGAAAATCGCAGAGCTAGAAGCAAAATGGGAAACATTTTTGTTTGAACATGGATGG 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 GAGAGGAAAATCGCAGAGCTAGAAGCAAAATGGGAAACATTTTTGTTTGAACATGGATGG 1951
Query 2006 GAACAAACAGTGGTAGCTCTTGAAGCTTGTGAGATGAGAAACTTGTTCTGTTGCGCTAAG 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GAACAAACAGTGGTAGCTCTTGAAGCTTGTGAGATGAGAAACTTGTTCTGTTGCGCTAAG 2011
Query 2066 CTTGTGGTGAGCAGCGCGTTAGCTAGACATGAAAGCAGAGGTCTTCATTACATGACAGAC 2125
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2012 CTTGTGGTGAGCAGCGCGTTAGCTAGACATGAAAGCCGAGGTCTTCATTATATGACAGAC 2071
Query 2126 TTTCCTTTTGTGGAAGAAAGCAAGCGGATTCCGACGATTATTCTACCGTCTTCTCCTACA 2185
||||||||||| |||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 2072 TTTCCTTTTGTTGAAGAAAGCAAGCGGATTCCTACAATTATTCTCCCCTCTTCTCCTACA 2131
Query 2186 ACAGCTAGTTGGAGCTCAAGGCGGTTACAGAATATAAGTAGCAGCTCACTTATTGATTGC 2245
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2132 ACAGCTAGTTGGAGCTCAAGGCGGTTACAGAATATAAGCAGCAGCTCACTTATTGATTGT 2191
Query 2246 TAAAACTGCAGGAGTTTTTGTTCTTATTTGAATCCAAACCTCTCTGATTATTGTATCAAT 2305
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2192 TAAAACTGCAGGAGTTTT-GTTCTTATTTGAATCCAATCCTCTCTTATTATTGTATCAAT 2250
Query 2306 TTGAAAAAATTTGGATCTCAAAAGGAATCTCTGATTCTGACACTCTGTAATACAAAAGGA 2365
|||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 2251 TTGAAAAATTTTGGAACTCAAAAGAAATCTCTGATTCTGACAATCTGTAATACAAAAGAA 2310
Query 2366 AATAAATTATTCATTTGAGATATC 2389
||||||||||||||||||||||||
Sbjct 2311 AATAAATTATTCATTTGAGATATC 2334
Score = 152 bits (82), Expect = 1e-35
Identities = 288/376 (77%), Gaps = 59/376 (16%)
Strand=Plus/Plus
Query 5 ACACCACTTGGGGGAGGCTC---C-CATACACAAAACGAAGGCGCGAATTTCAAGGACTC 60
|||||||||||||| ||||| | || |||||||| ||||||||||||||||||||| |
Sbjct 1 ACACCACTTGGGGGCGGCTCATACACAAACACAAAAGGAAGGCGCGAATTTCAAGGACGC 60
Query 61 TTCTCGACGACCAAACCACATAAAACACTCTTACCAGAATTTGTGTTGtcttcgttcatt 120
|||||||||||||||||| | |||| | | | || | || || | || |
Sbjct 61 TTCTCGACGACCAAACCAGA-AAAA-A----T---A-AA-CACTCTT-TC--C--TC--T 102
Query 121 tccttctcctcttcttcttcttcttcGTCGTAATTTTGATTGTTTCTTTGCGAAAAGTCG 180
| ||| || | ||| | || | || |||||||||||||| |||||||||||||| ||
Sbjct 103 T-CTT-TCGTTTTC-TGTT-GTATT--TCGTAATTTTGATTCTTTCTTTGCGAAAAATC- 155
Query 181 tt-tt-tt-tAATCAAGTCTGAATCACGTTTTATTGATC--T--ACACTCGCGTGGGTTC 233
|| || || | || |||||||||||||||| |||||||| | |||||||||| |||
Sbjct 156 TTCTTCTTCT-AT-AAGTCTGAATCACGTTCTATTGATCTATCGACACTCGCGT---TTC 210
Query 234 TCCGTTTCGTGCTTAGATCAGAGAGCTCCCTCCCGTGATTCCGAGCTTT-AAGG-TC-GG 290
| ||||||||||||||||||||| ||| |||| | || || ||| ||| |
Sbjct 211 T-CGTTTCGTGCTTAGATCAGAGCGCTTCCTCTCATG-TT---TTTTTTGTAGGAGCTAT 265
Query 291 A-AATGGCGGCTCATGTTTCTACTGGAAACATTCATAATTTCTATCTTGCGGGGCAGGTT 349
| ||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 266 ATAATGGCGGCTCATGTTTCTGCTGG--------A-AATTTCTATCTTGCGGGGCAGGTT 316
Query 350 TACAGGGGACAAGCTT 365
||||||||||||||||
Sbjct 317 TACAGGGGACAAGCTT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90007248935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5