BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14790.1
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488326 jgi|Araly1|488326|fgenesh2_kg.6__1460__AT5G14790.1 2182 0.0
> Ahg488326 jgi|Araly1|488326|fgenesh2_kg.6__1460__AT5G14790.1
Length=1552
Score = 2182 bits (1181), Expect = 0.0
Identities = 1459/1585 (92%), Gaps = 51/1585 (3%)
Strand=Plus/Plus
Query 1 TCGCATCGCCTGTTTTTATAATTTCTCGTCTTGTACAAAATAAAAGActctctctctctT 60
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct 1 TCGCATCGCCGGTTTTTATAATTT-TCGTCTTCTACAAAATAAAATTCTCTCTCTCTCTT 59
Query 61 AAAATTTCTCTTTCGATTCTCTCGCATTTCAAAATTTCATTTCCTTATATAGACTCTTAA 120
|||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 60 AAAATTTCTCCTTCGTTTCTCTCGCATTTCAAAATTTCATTTCCTTATATAGATTTTTAA 119
Query 121 GGCCGGCGATTTC-TGTGAGTCCATAGATTTTCGCTACTCCGCCGTCAGTTTTTCTCAAC 179
|| |||||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 GGTCGGCGA-TTCTTGCGAGTCCACAGATTTTCCCTACTCCGCCGTCAGTTTTTCTCAAC 178
Query 180 TCCGGAGGCTGTGTTTTTGCCACCGCTTTGATTCGCCGGTAAGTTCACGTATGGCCAGTA 239
| | ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 T-CAGAGGCTGCGTTTTCGCCACCGCTTTGATTCGCCGGTAACTTCACGTATGGCCAGTA 237
Query 240 ATACTTTGAAAGAGATGAATAGTCTTCATGTAACTGAGAAGATAAGTGACTGTAAAGCTA 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATACTTTGAAAGATATGAATAGTCTTCATGTAACTGAGAAGATAAGTGACTGTAAAGCTA 297
Query 300 GCTTGACCAAGCCATGTGTTGGTAAAATGAATGGAAAATCTGAAGATAGACCATTACCAA 359
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 298 GCTTAACCAAGCCTTGTGTTGGCAAAATGAATGGAAAATCTGAAGATAGACCATTACCAA 357
Query 360 ACTCTGCCTCCTTGGATTCCAGTGATTCTAAAGTTGTAGAAGCAGAGAAACCCGAGCCAG 419
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 358 ACTCTGCCTCCTTGGATTCCAGTGATCCTAAAGTTGCAGAAGCAGAGAAACCCGAGCCAG 417
Query 420 AGATAGCTATTGTGGAAGTTGAATATATTGAATCTGAAAACTTGGATAATGTAGACGATG 479
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 418 AGAAAGCTATTGTGGAAGTTGAATATATTGATTCCGAAAACTTGGATAATGTAGACGATG 477
Query 480 CTGATGCAGTTCTGAAGTCTGTTTTAGCTGGACTAGAGTCCAAGGACTGGATTTCACTCT 539
||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||
Sbjct 478 CTGATACAGTTCTGAAGTCGGTTTTAGCTGGACTCGAGTCCAAGGATTGGATTTCAGTCT 537
Query 540 GTGATGCTCTTAATAACGTTCGCCGACTTTCGATATTCCACAAGGAAGAAATGATGCATA 599
||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 538 GTGATGCTCTTAATAACGTTCGCCGGCTTTCGATATTCCACAAGGAAGCAATGTTGCATA 597
Query 600 TGCTTGAAAAAGTGATACCACTTGTCGTGAAATCACTGAAAAATCCAAGAAGTGCGGTGT 659
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 598 TGCTTGAAAAAGTGATACCACTTGTTGTGAAGTCCCTGAAAAATCCAAGAAGTGCGGTGT 657
Query 660 GTAAAACGGCATGCATGACATCTGCAGATATCTTCAGTGCATATAATAATCATATAACAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 GTAAAACGGCATGCATGACATCTGCAGATATCTTCAGTGCATATAATAATCATATTACAG 717
Query 720 ATCTGTTGGAGCCTCTGCTTACTCAACTACTCCTCAAGTCTTCCCAAGACAAACGGTTTG 779
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 ATCTGTTGGAGCCTTTGCTTACTCAACTCCTCCTCAAGTCTTCCCAAGACAAACGGTTTG 777
Query 780 TTTGCGAGGCAGCAGAGAAAGCTTTAACAGCAATGACCAAATATGTTTCCCCAACCTTGC 839
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 TTTGCGAGGCAGCAGAGAAAGCTTTAACAGCAATGACCAAATATGTTTCTCCAACCTTGC 837
Query 840 TGTTACCAAAGCTGCAACCTTGTCTCAAAAACAGGAATCCTCGGATCCGTGCCAAAGCAT 899
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 838 TGTTACCAAAGCTGCAACCTTGTCTCAAGAACAGGAATCCTCGGATCCGTGCTAAAGCAT 897
Query 900 CATTATGCTTTTCTCGAAGTGTTCCTCGACTGGGCGTTGAAGGGATTAAAGAATATGGAA 959
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 CATTATGCTTTTCTCGAAGTGTTCCTCGACTGGGCGTTGAAGGGATCAAAGAATATGGAA 957
Query 960 TCGACAAATTAGTTCAAGCAGCCGCATCTCAGCTTAGCGATCAGCTCCCTGAATCCCGTG 1019
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 TCGACAAACTAGTTCAAGCAGCCGCGTCTCAGCTTAGCGATCAGCTCCCTGAATCCCGTG 1017
Query 1020 AGGCTGCACGGACTGTCCTACTAGAACTTCAGAGCGTATATGAAAAAGCTCATCCTCTCA 1079
||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 AGGCTGCACGGACCGTCCTGCTAGAACTTCAGACCGTATATGAAAAAGCTCATCCTCTCA 1077
Query 1080 TCAACCCTGAGACATCATC---A-C--CA---GAAGAACAGCAAATCCCGGAGGTAGAGC 1130
|||||||||| |||||||| | | || |||||| ||||||| |||||| |||||
Sbjct 1078 TCAACCCTGAAACATCATCCTCATCATCACCAGAAGAAGAGCAAATTGCGGAGGCAGAGC 1137
Query 1131 CAATTACTTGGGAAA-CTTTCTGC-AAGTCAAAACTGTCGGCTCTTAGCGCACAAGCCGT 1188
|| |||||||||||| ||| |||| || ||||||||||||||||||||||||||||| ||
Sbjct 1138 CAGTTACTTGGGAAATCTT-CTGCCAA-TCAAAACTGTCGGCTCTTAGCGCACAAGCTGT 1195
Query 1189 GCTTCGTGTCACCAATGTTGTCACTGTTACTGCTCGGGAGGGTTTGGTTACTACAGGTTC 1248
||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||
Sbjct 1196 GCTTCGTGTCACCAATGTTGTGACTGTCAATGCTCGGGAGGGTTTGGTTACCACAGGTTC 1255
Query 1249 ATCATCTTCATCCCAGTTATAAACATTTTCTACTACAAATTTTTTA-AAAACCGTTTGCT 1307
|||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||
Sbjct 1256 ATCATCTTCATCTCAGTTATAAACCTTTTCTACTACAATTTTTTTTTAAAACCGTTTGCT 1315
Query 1308 ACGAGTCATACGGTTT-ACATGGTATTCTCCGGCATGGCGGCATGATCTACCAAATTGGC 1366
|||||||||||||||| |||||||||||||||||||| || | |||| ||||||
Sbjct 1316 ACGAGTCATACGGTTTTACATGGTATTCTCCGGCATG-----AT---CGACCATATTGGC 1367
Query 1367 AAATTATGGACCGATAAAAAGAGTGAACGTTCGTGT-ATGAAAAATCTTGGCTTCTTTCT 1425
||||||||||||||||||||||||||| | ||| | || |||| ||||| |||||||||
Sbjct 1368 AAATTATGGACCGATAAAAAGAGTGAATGC-CGTCTTATTAAAACTCTTGCCTTCTTTCT 1426
Query 1426 GGGTTAT-TTT-CTTTTTGTGGATTCTCATCTGTCTTCACTACCAGTACTTGTTTCTTTT 1483
||||||| ||| |||||||||| ||||| || ||||||||| | | |||
Sbjct 1427 GGGTTATATTTTCTTTTTGTGGGTTCTCTTCAGTCTTCACT-----T--T-----CTT-- 1472
Query 1484 TCTTATGTGTATATATTCTATACCAAGATTTGGTAAGATAGTCAT-GAGTCTTTTGGTTA 1542
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1473 ----ATGTGTATATATTCTATACCAAGATTTGGTAAGATAGTC-TCGAGTCTTTTGGTTT 1527
Query 1543 TATGCAAAATTGGTCGGATTCTTTG 1567
|||||||||||||||||||||||||
Sbjct 1528 TATGCAAAATTGGTCGGATTCTTTG 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5