BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14800.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893387 jgi|Araly1|893387|Al_scaffold_0006_1383 1363 0.0
> Ahg893387 jgi|Araly1|893387|Al_scaffold_0006_1383
Length=831
Score = 1363 bits (738), Expect = 0.0
Identities = 801/832 (96%), Gaps = 2/832 (0%)
Strand=Plus/Plus
Query 222 ATGGAGATTCTTCCGATTCCGGCGGAGAGTTTCAAGGTAGGATTCATCGGAGCTGGTAAA 281
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATTCTTCCGATTCCGGCGGAGAGCTTCAAGGTAGGATTCATCGGAGCTGGTAAA 60
Query 282 ATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCTAATCGTATA 341
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCAAATCGTATC 120
Query 342 TGCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTCTTCGAATCCTTTGGCGTCAAT 401
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TCCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTTTTCGAATCCTTTGGCGTCAAT 180
Query 402 GTCTTCTCCACTAGCGAAGAAGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTGAAA 461
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTCTTCTCCACTAGCGAAGAGGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTCAAA 240
Query 462 CCTCAAGTTGTTAAGAAGGCTGTCACAGAATTAAAGTCGAAGCTTTCAAAGAATAAGATT 521
|| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 241 CCCCAAGTTGTTAAGAAGGCTGTCACGGAATTAAGGTCGAAGCTTTCAAAGAGTAAGATT 300
Query 522 CTGGTTTCTGTTGCAGCTGGAATCAAGTTGAATGAT-TTACAGGAATGGTCTGGTCAAGA 580
|||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 301 CTGGTTTCGGTTGCAGCTGGAATCAAGTTGAAAGATCTT-CAGGAATGGTCTGGTCAAGA 359
Query 581 TCGATTCATAAGGGTGATGCCTAATACACCTGCCGCTGTTGGTGAGGCAGCTTCAGTTAT 640
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TCGATTCATAAGGGTGATGCCTAATACACCTGCCGCAGTTGGTGAGGCAGCTTCAGTTAT 419
Query 641 GAGCCTTGGCACAGGAGCAACGGAAGAGGATGGAGCAATTGTTGCTATGTTGTTTGGCGC 700
|||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 420 GAGCCTTGGCACAGGAGCTACGGAAGAGGATGGAGCTATTGTTGCTAAGTTATTTGGCGC 479
Query 701 GGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGTGG 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGCGG 539
Query 761 AAGTGGACCAGCATACATATTTTTAGCAATTGAAGCTTTAGCCGATGGAGGAGTAGCTGC 820
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 540 AAGTGGACCAGCATACATATTCTTAGCAATTGAAGCTTTAGCTGATGGAGGAGTAGCTGC 599
Query 821 TGGTTTACCCCGAGAGCTTGCATTGAGTTTAGCTTCACAGACCGTTCTTGGAGCTGCAAC 880
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TGGTTTACCCCGAGAGCTCGCATTGAGTTTAGCTTCACAAACCGTTCTTGGAGCTGCAAC 659
Query 881 GATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTTACCTCACCTGG 940
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 660 AATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTCACTTCACCTGG 719
Query 941 CGGCACTACAATAGCCGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTAT 1000
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGCACTACAATAGCTGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTAT 779
Query 1001 GAATGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA 1052
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAACGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5