BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14850.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893389 jgi|Araly1|893389|Al_scaffold_0006_1385 2534 0.0
> Ahg893389 jgi|Araly1|893389|Al_scaffold_0006_1385
Length=1629
Score = 2534 bits (1372), Expect = 0.0
Identities = 1554/1641 (95%), Gaps = 16/1641 (1%)
Strand=Plus/Plus
Query 14 ATGGATATAAGGAAGCGGAAGAACGCCGGCGGCGATGGCGACGGTGGCGCCGATGGCGCG 73
||||| ||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 1 ATGGAAATAAGGAAGCGGAAGAACGCCGGCGGCGATGGCGACGGTGGCG-CG-T--CG-G 55
Query 74 TCAGTTAATGTCGGAGATGAACCTGATTCGT-TTGGTGGTCGAAT-AGGATCTCCGAGGA 131
| ||| | ||| ||||| || ||||| | || || || | | ||||||||||||
Sbjct 56 -C---TAACGGCGGGGATGATCCCGATTC-TATTAGT-GTTTTTTCAAGATCTCCGAGGA 109
Query 132 GGATATTCTTGTTCTGCTTGGCGTTTCGTGTGGTAAATGCATTGTTGATTCAGACTTATT 191
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 110 GGATATTCTTGTTCTGCCTGGCGTTTCGTATGGTAAATGCAATGTTGATTCAGACTTATT 169
Query 192 TCAATCCTGACGAACATTGGCAATCACTTGAAGTAGCTCACCGCACCATATTTGGGTATG 251
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 170 TCAATCCGGACGAACATTGGCAATCACTTGAAGTAGCTCACCGCACCGTCTTTGGGTATG 229
Query 252 GTTATATGACATGGGAGTGGAAAAGAGGAATACGAAGCTATTTGCATCCAATGTTGTTCG 311
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 230 GTTATATGACATGGGAGTGGAAGAGAGGAATAAGAAGCTATTTGCATCCAATGGTGTTCG 289
Query 312 CATTCTTGTATAAACTTCTACAAGTTACTGGCCTTGATACTCCCTACATAATGATCAAAG 371
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CATTCTTGTATAAACTTCTCCAAGTTACTGGCCTTGATACTCCCTACATAATGATCAAAG 349
Query 372 CCCCACGTCTTATGCAATCCATATTTTCAGCTATTGGTGATCTCTATTTGTATAAACTCT 431
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CCCCACGTCTTATGCAATCTATATTTTCAGCTATTGGTGATCTCTATTTGTATAAACTCT 409
Query 432 CTGATGCTTTATATGGAGGAAATGTTGCAACTTGGTCTCTCTTTTGTCAAATGGCAAACT 491
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 410 CAGATGCTTTATATGGAGGAAATGTTGCAAGTTGGTCTCTCTTTTGTCAAATGGCAAACT 469
Query 492 GGTTCATCTTCTTCTGTTTGAACCGTACCTTTTCAAACTGTTTGGAGACTGTTCTTACCA 551
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 470 GGTTCATCTTCTTCTGTTTGAACCGTACCTTTTCAAACTGCTTGGAGACTGTTCTTACAA 529
Query 552 TCATGGGGCTGTACTACTGGCCTTGTATTAGAGATTCTTCAATAGACTATCCCGTGAATC 611
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 530 TCATGGGGCTGTACTACTGGCCTTGTATTAGAGATTCTTCAACAGACTATCCCGTGAATC 589
Query 612 GGAAGTGGGGTTTGGTCATAGCGGCCCTAGCATGTGCCATAAGGCCAACTAGTGCAGTCA 671
|||||||||||||||| |||| |||||| ||||||||||||||||| || |||||| |||
Sbjct 590 GGAAGTGGGGTTTGGTTATAGGGGCCCTTGCATGTGCCATAAGGCCTACAAGTGCAATCA 649
Query 672 TATGGTTATACGTTGGGATGCTCGAGCTATTTTTGACACCTAATAAGGTCAAATTCATCA 731
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 650 TATGGTTATACGTTGGGATGCTCGAGCTATTTTTGACACCTAATAAGGTCAAGTTCATTA 709
Query 732 TTCTAGAGGTGATCCCGATTGGATCTTTGGTCCTCGGTTTCACCTGTTTGTTGGACCGTC 791
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 710 TGCTAGAGGTGATCCCGATTGGATCTTTGGTCCTCGGTTTCACTTGTTTGTTGGACCGTC 769
Query 792 TGATGTACGGCTCGTGGGTCATTGTGCCTCTCAATTTTCTGAAGTTTAATTTCCTTTCGT 851
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 770 TGATGTACGGCTCGTGGGTCATTGTGCCTCTCAATTTTCTGAAGTTTAATTTCCTTTCAT 829
Query 852 CTGGTGGAGACTATTACGGAACTCACCCATGGCACTGGTACTTCACCCAGGGATTTCTTG 911
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 830 CTGGTGGAGACTATTACGGAACTCACCCATGGCACTGGTACTTCACTCAGGGATTTCTTG 889
Query 912 TCATGCTTTTCACTTTCACACCATTCTCCATTGCTGGAATTATCAAGTCTAAGAATCAGA 971
|||||||||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||
Sbjct 890 TCATGCTTTTCACTTTTACACCATTCTCCATTACTGGAATTTTCAATTCTAAGAACCAGA 949
Query 972 AGCTTTCAGCTCTTATTCTATGGGTCTTAGCAATATACAGCATACTCGGCCATAAGGAAT 1031
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 950 AGCTTTCAGCTCTTATTCTATGGGTCTTAGCAATATACAGCGTACTCGGCCACAAGGAAT 1009
Query 1032 TCAGGTTTGTCCTGCCTGTGCTACCCATAGCTTTGATATTCTCTGGGTATGCATTTGCTC 1091
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1010 TCAGGTTTGTCCTGCCTGTGCTGCCCATAGCTTTGATATTCTCTGGGTATGCATTTGCTC 1069
Query 1092 AAATGGAAGTATCTGGTtcatcatcatcatcatcaGTCACTAAAAAGAAGCAAGTCCCTC 1151
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1070 AAATGGAAGTATCTGGTTCATCATCA--A-CATCAGTCACTAAAAAGAAGCAAGTCCCTC 1126
Query 1152 GACAGAACCATACCAAGTGGTCTCCCAAACTAAGACTTTCAGTCTATTTTTTGCTTGCTA 1211
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct 1127 GACAGAACCATACCAAGTGGTCTCCTAAATTAAGACTTTCAGTCTTTTTTTTGCTTGCTA 1186
Query 1212 CCAATATTCCAATGGCACTATACATGAGTTTATTCCACCAGAGAGGAACTGAGGATGCGA 1271
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1187 CCAATATCCCAATGGCACTATACATGAGTTTATTCCATCAGAGAGGAACCGAGGATGCGA 1246
Query 1272 TGAATTACTTATCGGATGAAGCATACAAAGGCAGAGTAAAGAGCATTCTCTTTCTCATGC 1331
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1247 TGAACTACTTATCGGATGAAGCATACAAAGGGAGAGTAAAGAGCATTCTCTTTCTCATGC 1306
Query 1332 CGTGCCATTCTACTCCCTATTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCG 1391
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CCTGCCATTCTACTCCCTACTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCG 1366
Query 1392 ACTGCACTCCAAGTGCAGAGAAGGGAGAACTTGATGAGTCGGATCAGTTCTTAGTAAACC 1451
||||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1367 ACTGCACGCCAAGTGAAGAGAAGGGACAACTTGATGAGTCAGACCAGTTCTTAGTAAACC 1426
Query 1452 CTTTAGGTTTTGCATCAGAGTTAGCTAGAAACTGGTCAGAGCCGCCTAGTCATATTGTAT 1511
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1427 CTTTAGGTTTTGCATCAGAGTTAGCTAGCAACTGGTCAGTGCCGCCTAGTCATATTGTAT 1486
Query 1512 TGTTTGCATCAGAAGAAACAAAACTCAGAGATTTCATGATCCAACATTCCTTTAAAGAGG 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 TGTTTGCATCAGAAGAAACAAAACTCAGAGATTTCATGATCCAACATTCCTTTAAAGAGG 1546
Query 1572 TAAGGAGGTTTTTCCACGCGCATTTCAAGGTAGATCGAGATCTTCAATCCTCAGTGGTCG 1631
| || ||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1547 TGAGAAGGTTTTTCCACGCGCATTTCAAAGTTGATCGAGATCTTCAATCCTCGGTGGTCG 1606
Query 1632 TCTATGTTGTAAACCACGCAT 1652
||||||||||||||||| |||
Sbjct 1607 TCTATGTTGTAAACCACACAT 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5