BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14860.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350625 jgi|Araly1|350625|fgenesh1_pg.C_scaffold_6001218 2228 0.0
Ahg906507 jgi|Araly1|906507|Al_scaffold_0003_3635 1077 0.0
Ahg480568 jgi|Araly1|480568|fgenesh2_kg.3__3269__AT2G16890.2 1013 0.0
> Ahg350625 jgi|Araly1|350625|fgenesh1_pg.C_scaffold_6001218
Length=1473
Score = 2228 bits (1206), Expect = 0.0
Identities = 1392/1482 (94%), Gaps = 12/1482 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGTTTCATCGTCGCATCATGCGGTTCTCTTCCCTTACATGTCAAAAGGCCACACG 60
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGTTTCATCATCGCATCATGTGGTTCTCTTCCCTTACATGTCAAAAGGCCACACG 60
Query 61 ATTCCTCTCCTCCAATTCGCCCGTCTCCTCCTCCGTCACCGCCGTATCGTCTCCGTAGAC 120
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| | |
Sbjct 61 ATTCCTCTCCTCCAATTCGCCCGTCTCCTCCTCCGTCACCACCGTGTCGTCCCCG--G-C 117
Query 121 GACGAAGAACCAACCATTTCCGTCACCGTCTTCACCACCCCAAAAAACCAACCATTCGTC 180
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 GAC---GAACCAACCACTTCCGTCACCGTCTTCACCACCCCAAAGAACCAACCATTCGTC 174
Query 181 TCAAACTTCCTCTCTGACGTCGCATCATCTATCAAAGTAATCTCCCTCCCTTTCCCTGAA 240
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 175 TCAAACTTCCTCTCCGACGTCACATCATCAATCAAAGTAATCTCCCTCCCTTTCCCTGAA 234
Query 241 AACATCGCCGGAATCCCTCCCGGCGTCGAGAGCACCGACATGCTCCCTTCCATATCACTT 300
||||||||||||||||||||||||||||||| |||||| | |||||||| ||| ||||||
Sbjct 235 AACATCGCCGGAATCCCTCCCGGCGTCGAGAACACCGAAAAGCTCCCTTACATGTCACTT 294
Query 301 TACGTGCCCTTCACGCGCGCAACCAAATCTCTCCAGCCTTTCTTCGAAGCAGAACTCAAG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 295 TACGTGCCCTTCACGCGCGCTACCAAATCTCTCCAGCCTTTCTTCGAAGCAGAACTCAAG 354
Query 361 AATCTTGAGAAAGTTTCTTTCATGGTCTCCGATGGATTCTTATGGTGGACATCGGAATCC 420
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AATCTTGAGAAAGTGTCTTTCATGGTCTCCGATGGATTCTTATGGTGGACATCGGAATCT 414
Query 421 GCCGCTAAATTTGAGATCCCGAGACTTGCCTTCTACGGCATGAACTCCTACGCATCGGCT 480
||||||||| | ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 415 GCCGCTAAACTCGAGATTCCGAGACTCGCCTTCTACGGCATGAACTCGTACGCATCGGCT 474
Query 481 ATGTGCTCCGCCATTTCGGTACACGAGCTCTTTACCAAACCGGAAAGTGTTAAATCTGAT 540
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATGTACTCTGCCGTTTCGGTACACGAGCTCTTTACCAAACCGGAAAGTGTTAAATCTGAT 534
Query 541 ACTGAACCGGTTACTGTACCGGATTTTCCATGGATATGTGTTAAGAAGTGTGAGTTCGAT 600
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 535 ACTGAACCGGTTACTGTACCGGATTTTCCATGGATAAGTGTTAAGAAGTGCGAGTTCGAC 594
Query 601 CCGGTTTTGACCGAACCGGATCAATCGGA-TCCAGCGTTCGAGCTA-CTCATTGACCATC 658
|||||| ||||||||||||||||||| || ||||||||| |||||| | ||| ||||||
Sbjct 595 CCGGTTGTGACCGAACCGGATCAATC-GAGTCCAGCGTTTGAGCTAGC-CATGGACCATA 652
Query 659 TTATGTCCACCAAGAAAAGCCGTGGAGTTATAGTGAACAGCTTTTACGAGCTCGAGTCAA 718
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct 653 TTATGTCCACCAAGAAAAGTCGTGGAGTTATAGTGAACAGTTTTTACGAGCTCGAGCCAA 712
Query 719 CG-TTCGTTGACTACCGGCTCCGTGATAACGATGAACCAAAACCGTGGTGTGTTGGGCCT 777
|| ||| ||||||| ||||||| |||||| ||||| ||||| ||||||||||||||||||
Sbjct 713 CGTTTC-TTGACTATCGGCTCCTTGATAATGATGAGCCAAAGCCGTGGTGTGTTGGGCCT 771
Query 778 TTGTGTTTGGTAAATCCTCCAAAACCGGAGAGTGATAAACCGGATTGGATTCATTGGTTG 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTGTGTTTGGTAAATCCTCCTAAACCGGAGAGTGATAAACCGGATTGGATTCATTGGTTG 831
Query 838 GACCGGAAACTAGAGGAAAGATGTCCGGTTATGTATGTGGCGTTTGGAACGCAGGCTGAG 897
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 832 GACCGGAAACTAGAGGAAAGATGTCCGGTTATGTACGTGGCGTTTGGTACGCAGGCTGAG 891
Query 898 ATATCGAACGAGCAGCTCAAGGAAATAGCATTAGGGTTGGAAGATTCCAAGGTCAATTTC 957
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 892 ATATCAAACGATCAGCTCAAAGAAATTGCATTAGGGTTGGAAGATTCCAAGGTAAATTTC 951
Query 958 TTGTGGGTCACGAGAAAGGACTTGGAAGAAGTAACTGGAGGATTAGGGTTCGAAAAGAGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTGTGGGTCACGAGAAAGGACTTGGAAGAAGTAACTGGAGGATTAGGGTTCGAAAAGAGA 1011
Query 1018 GTGAAAGAGCATGGGATGATTGTGAGAGATTGGGTAGACCAATGGGAGATATTGTCACAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GTGAAAGAGCATGGGATGATTGTGAGAGATTGGGTAGACCAATGGGAGATATTGTCACAT 1071
Query 1078 AAAAGTGTCAAAGGGTTTTTGAGTCATTGTGGATGGAACTCGGCGCAAGAGAGTATTTGC 1137
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1072 GAAAGTGTCAAAGGATTTTTGAGTCATTGTGGATGGAACTCGGCGCAAGAGAGCATTTGC 1131
Query 1138 GCTGGGGTTCCACTACTCGCTTGGCCAATGATGGCAGAGCAGCCACTCAATGCGAAGTTG 1197
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCTGGAATTCCGCTACTCGCTTGGCCAATGATGGCAGAGCAGCCACTCAATGCGAAGTTG 1191
Query 1198 GTAGTGGAGGAGCTAAAGATCGGAGTAAGAATCGAAACAGAAGATGTAAGTGTGAAAGGA 1257
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1192 GTAGTGGAGGAGCTAAAGATTGGAGTAAGAATCGAAACAGAAGATGGAAGTGTGAAAGGA 1251
Query 1258 TTCGTGACAAGAGAAGAACTTAGTCGAAAGGTTAAACAATTGATGGAGGGAGAGATGGGG 1317
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1252 TTCGTGACAAGAGAAGAACTTAGTCGAAAGGTTAAACAATTGATGGAAGGAGATATGGGG 1311
Query 1318 AAGACAACGATGAAGAATGTAAAAGAGTATGCGAAAATGGCGAAAAAAGCTATGGCTCAA 1377
||||| | ||||||||||| |||||||||||| |||| |||||||||||| ||||||||
Sbjct 1312 AAGACTATAATGAAGAATGTGAAAGAGTATGCGGAAATAGCGAAAAAAGCTTTGGCTCAA 1371
Query 1378 GGGACTGGTTCGTCTTGGAAGAGTTTGGATTCGCTTCTGGAAGAGCTTTGTAAGAGTAGA 1437
||||| ||||| |||||||||| ||||||||| ||||| |||| | |||||||||||| |
Sbjct 1372 GGGACCGGTTCTTCTTGGAAGAATTTGGATTCACTTCTTGAAGCGTTTTGTAAGAGTATA 1431
Query 1438 GAGCCAGACGGTGTTAATAAGTTGTCAAGTTCTGATGCTTAG 1479
|||||| || |||||||||||||||||||||||||| ||||
Sbjct 1432 GAGCCAAACAATGTTAATAAGTTGTCAAGTTCTGATGATTAG 1473
> Ahg906507 jgi|Araly1|906507|Al_scaffold_0003_3635
Length=1449
Score = 1077 bits (583), Expect = 0.0
Identities = 1193/1476 (81%), Gaps = 87/1476 (6%)
Strand=Plus/Plus
Query 19 CATCATGCGGTTCTCTTCCCTTACATGTCAAAAGGCCACA-CGATTCCTCTCCTCCAATT 77
||||| | ||| |||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 19 CATCACGTGGTCCTCTTCCCTTACATGTCAAAAGGCCACATC-ATCCCTCTCCTCCAATT 77
Query 78 CGCCCGTCTCCTCCTCCGTCACCGCCGTATCGTCTCCGTAGACGACGAA-GAACCAAC-C 135
|| ||||||||||||||||| || | ||| | | | ||| ||||| | |
Sbjct 78 CGGTCGTCTCCTCCTCCGTCA---CC--A------CCGCA-A--A-GAACCAACCATCTC 122
Query 136 ATT-TCCGTCACCGTCTTCACCACCCCAAAAAACCAACCATTCGTCTCAAACTTCCTCTC 194
|| ||||||||||||||||||| || || |||||||| ||| ||||| ||||||||||
Sbjct 123 CTTCACCGTCACCGTCTTCACCACTCCTAAGAACCAACCTTTCATCTCAGACTTCCTCTC 182
Query 195 TGACGTCGCATCATCTATCAAAGTAATCTCCCTCCCTTTCCCTGAAAACATCGCCGGAAT 254
|||| ||| | |||||||| || || ||||||||||| ||||||||| |||||||
Sbjct 183 GGACG-CGC--CGGAGATCAAAGTGATTTCTCTCCCTTTCCCGGAAAACATCACCGGAAT 239
Query 255 CCCTCCCGGCGTCGAGAGCACCGACATGCTCCCTTCCATATCACTTTACGTGCCCTTCAC 314
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 240 CCCTCCCGGCGTCGAGAGCACCGACAAGCTCCCATCCATGTCACTTTACGTGCCCTTCAC 299
Query 315 GCGCGCAACCAAATCT-CTCCAGCCTTTCTTCGAAGCAGA-ACTCAAGAATCTTGAGAAA 372
||||| || || || ||||| ||||||||||||| | | ||||||||||||| ||
Sbjct 300 ACGCGCCACGAAG-CTTCTCCAACCTTTCTTCGAAGAA-ACACTCAAGAATCTTCCTCAA 357
Query 373 GTTTCTTTCATGGTCTCCGATGGATTCTTATGGTGGACATCGGAATCCGCCGCTAAATTT 432
||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||| ||
Sbjct 358 GTTTCTTTCATGGTCTCCGATGGATTCCTCTGGTGGACATCAGAATCCGCAGCTAAGTTC 417
Query 433 GAGATCCCGAGACTTGC-CTTCTACGGCATGAACTCCTACGCATCGGCTAT-GTGC-TC- 488
|||| || || ||| ||| ||||| || ||||| ||||| || || | || | ||
Sbjct 418 AAGATTCCTAGG-TTGGTCTTTTACGGTATTAACTCTTACGCCTCTGCCGTCGT-CATCT 475
Query 489 CGCCATTTCGGTACACGAGCTCTTTACCAAACCGGAAAGTGTTAAATCTGATACTGAACC 548
| | |||| |||| | ||||||||| ||||||||| | | ||||||||||| |||||
Sbjct 476 CTAC-TTTCCA-ACACAAACTCTTTACCGAACCGGAAA-T-T-AAATCTGATACCGAACC 530
Query 549 GGTTACTGTACCGGATTTTCCATGGATATGTGTTAAGAAGTGTGAGT-TCGATCCG-GTT 606
||| ||||||||||| ||||||||||| ||||||||||||||| | |||| || |||
Sbjct 531 GGTCACTGTACCGGACTTTCCATGGATCCATGTTAAGAAGTGTGA-TCTCGA-CCATGTT 588
Query 607 -TTGACCGAACCGGATCAATC-GGATCCAGCGTT-CGAGCTACTCATTGACCATCTTATG 663
|| ||||| || | ||||| || |||||| | ||| ||| |||| ||||| | ||
Sbjct 589 CTT-ACCGATCCAAAACAATCAGG-TCCAGC-TCACGAACTATTCATAGACCAAATGATT 645
Query 664 TCCACCAAGAAAAGCCGTGGAGTTAT-AGTGAACAGCTTT-TACGAGCTCGAGTCAACGT 721
|| |||| | ||||| ||| ||| | ||| || || ||| ||||||||||||||| | |
Sbjct 646 TCGACCACCACAAGCCATGG-GTTTTTAGTCAATAG-TTTCTACGAGCTCGAGTCAGCAT 703
Query 722 TCGTTGACTAC--CGGCT--CCGTGATAACGAT-GAACCAAAACCGTGGTGTGTTGGGCC 776
| ||||| | | | | || | | ||| || ||||| ||||||||||||||||
Sbjct 704 TTGTTGATTGCAACAA-TAACC-TC-TCT-GATAGA-CCAAAGTCGTGGTGTGTTGGGCC 758
Query 777 TTTGTGTTTGGTAAATCCTCCAAAACCGGAGAGTGATAAACCGGATTGGATTCATTGGTT 836
|||||||| ||||||| ||| || |||||| |||||||| |||||||||||||||
Sbjct 759 ACTGTGTTTGACCGATCCTCCTAAATCGAAGAGTGCTAAACCGGCTTGGATTCATTGGTT 818
Query 837 GGACCGGAAACTAGAGGAAAGATGTCCGGTTATGTATGTGGCGTTTGGAACGCAGGCTGA 896
||||||||| | ||| || | |||||||| |||| |||||||||||||||||||| ||
Sbjct 819 GGACCGGAAGCGAGAAGAGGGGCGTCCGGTTTTGTACGTGGCGTTTGGAACGCAGGCAGA 878
Query 897 GATATCGAACGAGCAGCTCAAGGAAATAGCATTAGGGTTGGAAGATTCCAAGGTCAA-TT 955
|||||||||| |||||||||||||| |||| ||||| ||||||||||||||||| || ||
Sbjct 879 GATATCGAACAAGCAGCTCAAGGAACTAGCTTTAGGCTTGGAAGATTCCAAGGTGAACTT 938
Query 956 TCTTGTGGGTCACGAGAAAGGACTTGGAAGA-AGTAACTGGAGGATTAGGGTTCGAAA-A 1013
||| ||||||||||||||| ||| ||||||| | || ||||| | ||| ||| || |
Sbjct 939 TCT-GTGGGTCACGAGAAAAGACGTGGAAGAGACTAT-TGGAG-A--AGGATTC-AACGA 992
Query 1014 GAGAGTGAA-AGAGCA-TGGGATGATTGTGAGAGATTGGGTAGACCAATGGGAGATATTG 1071
||| | || |||| | ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 993 TAGAAT-AAGAGAG-AGTGGGATGATAGTGAGAGATTGGGTGGACCAATGGGAGATATTG 1050
Query 1072 TCACATAAAAGTGTCAAAGGGTTTTTGAGTCATTGTGGATGGAACTCGGCGCAAGAGAGT 1131
|||||| ||||||||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct 1051 TCACATGAAAGTGTCAAAGGATTTTTGAGCCATTGTGGATGGAATTCAGCTCAAGAGAGC 1110
Query 1132 ATTTGCGCTGGGGTTCCACTACTCGCTTGGCCAATGATGGCAGAGCAGCCACTCAATGCG 1191
|| |||| |||||| ||| | || |||||||| |||||||| ||||| ||| ||||||||
Sbjct 1111 ATATGCGTTGGGGTCCCATTGCTGGCTTGGCCGATGATGGCCGAGCAACCATTCAATGCG 1170
Query 1192 AAGTTGGTAGTGGAGGAGCTAAAGATCGGAGTAAGAATCGAAACAGAAGATGTAAGTGTG 1251
||| |||| ||||||||| ||||| ||||||||||| | ||||| ||||||| |||||
Sbjct 1171 AAGATGGTTGTGGAGGAGATAAAGGTCGGAGTAAGAGTTGAAACGGAAGATGGGAGTGTA 1230
Query 1252 AAAGGATTCGTGACAAGAGAAGAACTTAGTCGAAAGGTTAAACAATTGATGGAGGGAGAG 1311
||||| |||||||||||||| ||||| ||||||||||||||| || | ||||| |||||
Sbjct 1231 AAAGGTTTCGTGACAAGAGAGGAACTAAGTCGAAAGGTTAAAGAACTAATGGAAGGAGAA 1290
Query 1312 ATGGGGAAGACAACGATGAAGAA-TGTAAAAGAGTA-TGCGAAAATGGCGAAAAA-AGCT 1368
| ||| || || | | ||| || ||| ||||| || | | |||||||| |||| ||||
Sbjct 1291 ACGGGAAAAACCGCAA-GAAAAAATGTGAAAGAATACT-CAAAAATGGC-AAAAGCAGCT 1347
Query 1369 ATGGCTC-AAGGGACTGGTTCGTCTTGGAAGAGTTTGGATTCGCTTCTGGAAG-AGCTT- 1425
||| || |||||||||||||||||||||||| ||| |||| |||||| ||| || ||
Sbjct 1348 TTGG-TCGAAGGGACTGGTTCGTCTTGGAAGAATTTAGATTTGCTTCTT-AAGGAG-TTA 1404
Query 1426 TGTAAGAGTAGAGAGCCAGACGGTGTTAATAAGTTG 1461
|| ||||||| ||||||| |||||||| ||||||||
Sbjct 1405 TGCAAGAGTAAAGAGCCAAACGGTGTTTATAAGTTG 1440
> Ahg480568 jgi|Araly1|480568|fgenesh2_kg.3__3269__AT2G16890.2
Length=1637
Score = 1013 bits (548), Expect = 0.0
Identities = 1177/1468 (80%), Gaps = 93/1468 (6%)
Strand=Plus/Plus
Query 19 CATCATGCGGTTCTCTTCCCTTACATGTCAAAAGGCCACA-CGATTCCTCTCCTCCAATT 77
||||| | ||| |||||||||||||||||||||||||||| | || || |||||||||||
Sbjct 72 CATCACGTGGTCCTCTTCCCTTACATGTCAAAAGGCCACATC-ATCCCCCTCCTCCAATT 130
Query 78 CGCCCGTCTCCTCCTCCGTCACCGCCGTATCGTCTCCGTAGACGACGAA-GAACCAAC-C 135
|| ||||||||||||||||| || | ||| | | | ||| ||||| | |
Sbjct 131 CGGTCGTCTCCTCCTCCGTCA---CC--A------CCGCA-A--A-GAACCAACCATCTC 175
Query 136 ATT-TCCGTCACCGTCTTCACCACCCCAAAAAACCAACCATTCGTCTCAAACTTCCTCTC 194
|| ||||||||||||||||||| || || |||||||| ||| ||||| ||||||||||
Sbjct 176 CTTCACCGTCACCGTCTTCACCACTCCTAAGAACCAACCTTTCATCTCAGACTTCCTCTC 235
Query 195 TGACGTCGCATCATCTATCAAAGTAATCTCCCTCCCTTTCCCTGAAAACATCGCCGGAAT 254
||| ||| | |||||||| || || ||||||||||| ||||||||| |||||||
Sbjct 236 GGAC-ACGC--CGGAGATCAAAGTCATTTCTCTCCCTTTCCCGGAAAACATCACCGGAAT 292
Query 255 CCCTCCCGGCGTCGAGAGCACCGACATGCTCCCTTCCATATCACTTTACGTGCCCTTCAC 314
|||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||
Sbjct 293 CCCTCCCGGCGTCGAGAGCACCGACAAGCTCCCTTCCATGTCACTTTTCGTTCCCTTCAC 352
Query 315 GCGCGCAACCAAATCT-CTCCAGCCTTTCTTCGAAGCAGA-ACTCAAGAATCTTGAGAAA 372
||||| || || || ||||| ||||||||||| | | | ||||||||||||| ||
Sbjct 353 ACGCGCCACGAAG-CTTCTCCAACCTTTCTTCGAGGAA-ACACTCAAGAATCTTCCTCAA 410
Query 373 GTTTCTTTCATGGTCTCCGATGGATTCTTATGGTGGACATCGGAATCCGCCGCTAAATTT 432
||||||||||||||||||||||||||| | ||||||||||||||||| || ||||| ||
Sbjct 411 GTTTCTTTCATGGTCTCCGATGGATTCCTCTGGTGGACATCGGAATCTGCAGCTAAGTTC 470
Query 433 GAGATCCCGAGACTTGC-CTTCTACGGCATGAACTCCTACGCAT-CGGCTATGTGC-TCC 489
|||| || || ||| |||||||||||||||||| ||| | | | ||||| | | ||
Sbjct 471 AAGATTCCTAGG-TTGGTCTTCTACGGCATGAACTCTTACTC-TGCCGCTATCTCCATCT 528
Query 490 GCCATTT-CGGTACACGAGCTCTTTACCAAACCGGAAAGTGTTAAATCTGATACTGAACC 548
| ||| | |||| | ||||||||| ||||||||| | ||||||||||| |||||
Sbjct 529 -CTGTTTTCAA-ACACAAACTCTTTACCGAACCGGAAACT---AAATCTGATACCGAACC 583
Query 549 GGTTACTGTACCGGATTTTCCATGGATATGTGTTAAGAAGTGTGAGTTCGATCC--GGTT 606
||| ||||||||||| ||||||||||| | |||||||||||||| ||||| || |||
Sbjct 584 GGTCACTGTACCGGACTTTCCATGGATCCGAGTTAAGAAGTGTGATTTCGA-CCATGGTA 642
Query 607 TTGACCGAACCGGATCAATC-GGATCCAGCGTTCGAGCTA-CTCATTGACCATCTTATGT 664
| ||||| || | |||| || | |||| || || || || || ||||| | ||||
Sbjct 643 CT-ACCGATCCCAAAGAATCAGG-TGCAGCCTTAGAATTATCT-ATGGACCAAATCATGT 699
Query 665 CCACCAAGAAAAGCCGTGGAGTTAT-AGTGAACAGCTTTTACGAGCTCGAGTCAACGTTC 723
| | ||| | ||||| ||| ||| | ||| || ||||| ||||||||||| ||||| ||
Sbjct 700 CGAACAATACAAGCCATGG-GTTTTTAGTCAATAGCTTCTACGAGCTCGAATCAACATTT 758
Query 724 GTTGACTA---C--CGGCTCCGTGATAACGATGAACCAAAACCGTGGTGTGTTGGGCCTT 778
||||| || | | ||| |||| | | || ||||| ||||||||||||||||
Sbjct 759 GTTGATTATAACAACAACTC--TGATGAT-A-GA-CCAAAGTCGTGGTGTGTTGGGCCAC 813
Query 779 TGTGTTTGGTAAATCCTCCAAAACCGGAGAGTGATAAACCGGATTGGATTCATTGGTTGG 838
|||||||| | ||||||| ||||||| ||| | |||||||| |||||||||||||||||
Sbjct 814 TGTGTTTGACAGATCCTCCTAAACCGGGGAGGGCTAAACCGGCTTGGATTCATTGGTTGG 873
Query 839 ACCGGAAACTAGAGGAAAGATGTCCGGTTATGTATGTGGCGTTTGGAACGCAGGCTGAGA 898
| ||||| | ||||||| | |||||||| |||| |||||||||||||||||||| ||||
Sbjct 874 ATCGGAAGCGAGAGGAAGGGCGTCCGGTTTTGTACGTGGCGTTTGGAACGCAGGCAGAGA 933
Query 899 TATCGAACGAGCAGCTCAAGGAAATAGCATTAGGGTTGGAAGATTCCAAGGTCAA-TTTC 957
|||||||| ||||||| | |||| |||| ||||| ||||||||||| ||||| || ||||
Sbjct 934 TATCGAACAAGCAGCTTATGGAACTAGCTTTAGGCTTGGAAGATTCTAAGGTGAACTTTC 993
Query 958 TTGTGGGTCACGAGAAAGGACTTGGAAGA-AGTAACT-GGAGGATTAGGGTTCGAAA-AG 1014
| ||||||||| ||||| ||| |||| || | | || |||| | ||| ||| || |
Sbjct 994 T-GTGGGTCACAAGAAAAGACGTGGAGGAGATT--CTTGGAG-A--AGGATTC-AACGAT 1046
Query 1015 AGAGTGAA-AGAGCA-TGGGATGATTGTGAGAGATTGGGTAGACCAATGGGAGATATTGT 1072
||| | || |||| | ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1047 AGAAT-AAGAGAG-AGTGGGATGATAGTGAGAGATTGGGTGGACCAATGGGAGATATTGT 1104
Query 1073 CACATAAAAGTGTCAAAGGGTTTTTGAGTCATTGTGGATGGAACTCGGCGCAAGAGAGTA 1132
||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1105 CACATGAAAGTGTCAAAGGATTTTTGAGCCATTGTGGATGGAACTCAGCGCAAGAGAGCA 1164
Query 1133 TTTGCGCTGGGGTTCCACTACTCGCTTGGCCAATGATGGCAGAGCAGCCACTCAATGCGA 1192
| |||| |||||| ||| | || |||||||| |||||||| ||||| || ||||||||||
Sbjct 1165 TATGCGTTGGGGTCCCATTGCTGGCTTGGCCGATGATGGCCGAGCAACCGCTCAATGCGA 1224
Query 1193 AGTTGGTAGTGGAGGAGCTAAA-GATCGGAGTAAGAATCGAAACAGAAGATGTAAGTGTG 1251
| |||| ||||| ||| |||| | ||||||||||| | ||||| ||||||| |||||
Sbjct 1225 AAATGGTTGTGGATGAGATAAAAG-TCGGAGTAAGAGTTGAAACGGAAGATGGGAGTGT- 1282
Query 1252 A-AAGGATTCGTGACAAGAGAAGAACTTAGTCGAAAGGTTAAACAATTGATGGAGGGAGA 1310
| ||||||||||||||||||| ||||| ||||||||| ||||| || | ||||| |||||
Sbjct 1283 ACAAGGATTCGTGACAAGAGAGGAACTAAGTCGAAAGATTAAAGAACTAATGGAAGGAGA 1342
Query 1311 GATGGGGAAGA-CAACGATGAA-GAATGTAAAAGAGTA-TGCGAAAATGGCGAAAAA-AG 1366
| ||| || | | ||| ||| |||||| ||||| || | | |||||||| |||| ||
Sbjct 1343 AACGGGAAA-ATCTGCGA-GAAAGAATGTGAAAGAATACT-CAAAAATGGC-AAAAGCAG 1398
Query 1367 CTATGGCTC-AAGGGACTGGTTCGTCTTGGAAGAGTTTGGATTCGCTTCTGGAA-GAGCT 1424
|| ||| || |||||||||||||||||||||||| || |||| | |||| || || ||
Sbjct 1399 CTTTGG-TCGAAGGGACTGGTTCGTCTTGGAAGAACTTAGATTTGATTCTT-AATGA-CT 1455
Query 1425 T-TGTAAGAGTAGAGAG-CCAGACGGTG 1450
| |||||||||||||| ||| ||||||
Sbjct 1456 TATGTAAGAGTAGAGATTCCA-ACGGTG 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5