BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14870.1
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488330 jgi|Araly1|488330|fgenesh2_kg.6__1464__AT5G14870.1 3439 0.0
> Ahg488330 jgi|Araly1|488330|fgenesh2_kg.6__1464__AT5G14870.1
Length=2321
Score = 3439 bits (1862), Expect = 0.0
Identities = 2187/2336 (94%), Gaps = 53/2336 (2%)
Strand=Plus/Plus
Query 1 ATGAATAAAATCCGGTCTCTCCGCTGCCTCCTCCCGGAGACCATAACCTCCGCCTCCACC 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1 ATGAATAAAATCCGGTCTCTCCGCTGCCTCCTCCCGGAGACCATAA------CCT---CC 51
Query 61 GCCGCCTCAAATCGAGGATCTGACGGTAGCCAATTCAGCG---TCCTATGGCGGCATCAG 117
|||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 52 GCCGCCTCTAATCGAGGATCTGACGGTAGCCAAGTCAGCGTCCTCCTATGGCGGCATCAG 111
Query 118 ATCCTGGACCCGGACAGCAACATCGTCACCTATTGGAACCACGTCTTTCTCATTACCTCA 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ATCCTCGACCCGGACAGCAACATCGTCACCTATTGGAACCACGTCTTTCTCATTACCTCA 171
Query 178 ATCCTCGCTCTCTTCCTCGATCCTTTCTATTTCTACGTCCCTTACGTCGGTGGTCCGGCG 237
|||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 172 ATCCTCGCTCTCTTTCTCGATCCTCTCTACTTCTACGTCCCTTACGTCGGAGGTCCGGCG 231
Query 238 TGTCTCTCCATCGACATCAGCCTCGCCGCTACTGTCACTTTCTTCCGTACAGTCGCCGAT 297
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 232 TGTCTCTCCATCGACATCAGCCTCGCCGCTACAGTAACTTTCTTCCGTACAGTCGCCGAT 291
Query 298 ATCTTCCACCTCTTGCACATTTTCATGAAATTCAGAACTGCGTTCGTCGCGAGGAGTTCT 357
|||||||||||||||||||| |||||||||||||||| || ||||||||||| || |||
Sbjct 292 ATCTTCCACCTCTTGCACATCCTCATGAAATTCAGAACCGCCTTCGTCGCGAGAAGCTCT 351
Query 358 CGTGTTTTTGGTCGCGGTGAGCTTGTTATGGATTCTAGAGAGATTGCTATGAGATACTTG 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGAGTTTTTGGTCGCGGTGAGCTTGTTATGGATTCTAGAGAGATTGCTATGAGATACTTG 411
Query 418 AAGACAGATTTCCTCATTGATGTCGCCGCCATGCTTCCCCTTCCTCAGCTTGTTATTTGG 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 412 AAGACAGATTTCCTCATTGATGTCGCCGCCATGCTTCCTCTTCCTCAGCTTGTTATTTGG 471
Query 478 CTAGTAATTCCAGCGGCCACAAATGGAACTGCTAATCATGCCAATAGCACTCTCGCACTT 537
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 472 CTAGTAATTCCAGCCGCTACAAACGGGACTGCTAATCATGCCAATAGCACTCTCGCACTT 531
Query 538 ATCGTTCTTGTTCAATACATTCCAAGATCATTCATCATATTCCCACTCAACCAAAGGATT 597
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 ATCGTTCTTGTTCAATACATTCCAAGATCATTCATCATATTCCCTCTCAACCAAAGGATT 591
Query 598 ATCAAAACAACCGGGTTTATCGCCAAGACTGCTTGGGCAGGAGCTGCATACAACCTCCTA 657
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 592 ATCAAAACAACCGGGTTTATCGCCAAGACTGCTTGGGCTGGAGCTGCATACAACCTCCTC 651
Query 658 TTGTACATCCTTGCTAGTCACGTGTTAGGAGCAATGTGGTATCTGTCATCAATCGGGCGG 717
| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 652 CTCTACATCCTTGCTAGTCACGTTTTAGGAGCAATGTGGTATTTGTCATCAATCGGGCGG 711
Query 718 CAGTTTTCGTGCTGGTCCAACGTATGCAAGAAAGACAACGCTTTGAGAGTTTTGGATTGT 777
||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||
Sbjct 712 CAGTTTTCGTGCTGGTCTAATGTATGTAAGAAAGATAACGCCCTGAGAGTTTTGGATTGT 771
Query 778 CTTCCTAGCTTCTTGGATTGCAAGAGTTTAGAA-CAACCAGAGCGCCAGTATTGGCAGAA 836
||||||||||||||||| ||||||||||| | | ||||| ||||||||||||||||||||
Sbjct 772 CTTCCTAGCTTCTTGGACTGCAAGAGTTT-GCAGCAACCTGAGCGCCAGTATTGGCAGAA 830
Query 837 CGTTACTCAGGTCCTTTCTCATTGTGATGCTACAAGCAGCACTACCAATTTCAAATTCGG 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 CGTTACTCAGGTCCTTTCTCATTGTGATGCTACAAGCAGCACTACCAATTTCAAGTTCGG 890
Query 897 AATGTTTGCTGAAGCCTTTACCACTCAAGTTGCTACAACAGATTTTGTGTCCAAGTACTT 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 891 AATGTTTGCTGAAGCCTTTACCACTCAAGTTGCTACAACAGATTTTGTGTCCAAATACTT 950
Query 957 GTATTGTCTTTGGTGGGGTTTAAGAAATCTAAGTTCTTATGGACAGAATATAACCACAAG 1016
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 951 GTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGTTCTTATGGCCAGAATATAACCACAAG 1010
Query 1017 TGTATACCTTGGCGAGACCTTGTTCTGTATAACAATTTGTATTTTTGGGTTGATTCTCTT 1076
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGTGTACCTTGGCGAGACCTTGTTCTGTATAACAATTTGTATTTTTGGGTTGATTCTCTT 1070
Query 1077 CACACTCCTGATTGGTAACATGCAATCTTCTCTGCAATCGATGTCAGTAAGAGTTGAGGA 1136
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1071 TACACTCCTGATTGGTAACATGCAATCTTCTCTACAATCGATGTCAGTAAGAGTTGAGGA 1130
Query 1137 ATGGAGAGTTAAGAGAAGAGACACTGAAGAATGGATGAGACATCGTCAACTACCTCCAGA 1196
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATGGAGAGTTAAGCGAAGAGATACTGAAGAATGGATGAGACATCGTCAACTACCTCCAGA 1190
Query 1197 GCTTCAAGAACGTGTCCGAAGATTTGTCCAATACAAATGGCTTGCAAC-CAGAGGTGTCG 1255
|||||||||||||||||||||||| || ||||| |||||||||||||| | |||||||||
Sbjct 1191 GCTTCAAGAACGTGTCCGAAGATTCGTTCAATATAAATGGCTTGCAACAC-GAGGTGTCG 1249
Query 1256 ATGAAGAATCAATCCTCCATTCATTACCTACAGATTTACGCCGTGAAATCCAACGTCATC 1315
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1250 ATGAAGAATCAATCCTCCATTCATTACCTACAGATTTACGCCGCGAAATCCAACGTCATC 1309
Query 1316 TTTGTCTCTCCCTTGTTCGCCGGGTCCCGTTCTTCTCTCAAATGGATGATCAACTTCTTG 1375
|||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1310 TTTGTCTCGCCCTTGTCCGCCGGGTCCCATTCTTCTCTCAAATGGATGATCAACTTCTTG 1369
Query 1376 ATGCTATATGCGGATGCCTTGTCTCATCTTTAAGCACGGCCGGGACATACATATTCCGTG 1435
|||||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 1370 ATGCTATATGTGGATGCCTTGTCTCATCTTTAAGCACAGCTGGGACCTACATATTTCGTG 1429
Query 1436 AAGGTGATCCGGTGAATGAGATGCTATTTGTGATCCGAGGACAAATAGAGAGCTCAACAA 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 AAGGTGATCCGGTGAATGAGATGCTATTTGTGATCCGAGGACAAATAGAGAGCTCAACAA 1489
Query 1496 CAAATGGAGGAAGATCTGGTTTCTTCAACTCCACTACTCTACGACCTGGCGATTTCTGTG 1555
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1490 CAAATGGAGGAAGATCTGGTTTCTTTAACTCCACTACTCTACGACCTGGCGATTTCTGTG 1549
Query 1556 GGGAAGAACTTCTTACATGGGCCTTAATGCCAAACTCTACACTCAATCTTCCGTCTTCAA 1615
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1550 GGGAAGAACTTCTTACATGGGCCTTAATGCCAAACTCTACCCTCAATCTTCCGTCTTCAA 1609
Query 1616 CACGAAGCGTCCGTGCCCTCTCTGAAGTAGAAGCCTTTGCATTAAGCGCAGAGGATCTTA 1675
| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1610 CCCGAAGCGTCCGTGCACTCTCTGAAGTCGAAGCCTTTGCCCTAAGCGCAGAGGATCTTA 1669
Query 1676 AGTTTGTTGCTCATCAGTTCAAACGTCTTCAAAGCAAAAAGCTTCAACACGCTTTCAGGT 1735
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1670 AGTTCGTTGCTCATCAGTTCAAGCGTCTTCAAAGCAAAAAGCTACAACACGCTTTCAGGT 1729
Query 1736 ACTACTCACATCAATGGAGAGCATGGGGAGCATGTTTTGTCCAATCTGCATGGAGAAGAT 1795
||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1730 ACTACTCACATCAGTGGCGAGCATGGGGGGCATGTTTTGTCCAATCCGCATGGAGAAGAT 1789
Query 1796 ACAAGCGAAGAAAGCTTGCGAAAGAGCTCAGCCTTCACGAGAGTAGCGGATACTATTACC 1855
|||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1790 ACAAGCGAAGAAAGCTCGCGAAAGAACTCAGCCTTCATGAAAGTAGCGGATACTATTACA 1849
Query 1856 CGGATGAAACAGGTTACAATGAAGAAGACGAAGAAACTAGAGAGTATTACTATGGAAGTG 1915
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1850 CGGATGAAACAGGTTACAATGAAGAAGACGAAGAAACTAGAGAGTATTACTATGGAAGCG 1909
Query 1916 ACGAGGA--A---GG----CGGATCAATGGACAACACAAA------TC----TG--GGAG 1954
||||||| | || ||||||||||||||||||||| || | ||||
Sbjct 1910 ACGAGGAGGATATGGAAGGCGGATCAATGGACAACACAAACAACAATCAAAATCTTGGAG 1969
Query 1955 CAACGATCTTAGCATCTAAATTTGCGGCGAACACGAGAAGAGGAACAAATCAAAAGGCTT 2014
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1970 CAACGATCTTAGCATCTAAATTCGCGGCAAACACGAGAAGAGGCACAAATCAAAAGGCTT 2029
Query 2015 CAAGTAGTAGTACTGGTAAGAAAGATGGATCTTCCACCAGTTTGAAGATGCCTCAACTAT 2074
||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 2030 CAAGTAGTAGTACTGGTAAAAAAGATGGATCTTCAAGCAGTTTGAAGATGCCTCAACTAT 2089
Query 2075 TCAAACCAGATGAGCCTGATTTCTCTATAGATAAAGAAGACGTTTAAAGTGTAGTCATTA 2134
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2090 TCAAACCAGATGAGCCTGATTTCTCTATAGATAAAGAAGACGTTTAAAGTGTAGACATTA 2149
Query 2135 TGGGCAAAAAACTTTTGTGTGAACTGTTTGGTTTTAGATGGTAAATAGTTAGGAAACTCC 2194
|| ||||||||||| ||||||||||||| ||||||||||||| |||| ||||||| |||
Sbjct 2150 TGAGCAAAAAACTT--GTGTGAACTGTTTCGTTTTAGATGGTACATAGATAGGAAA-TCC 2206
Query 2195 CTTAA-TTATTTCAACTTGTAATTTTT--CTTTTCTTTTC-----GTTTCGGTTTGAGGA 2246
| ||| |||||| ||||| |||||||| |||||||||| ||||||||||| |||
Sbjct 2207 CATAAATTATTTGAACTTCTAATTTTTTTCTTTTCTTTTTTTTTTGTTTCGGTTTG-GGA 2265
Query 2247 -TGTTA---GATATAGAAAACGAGTGTAGAGTAAAAATACATTGTTCTTAAACTGT 2298
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2266 ATGTTATTAGATATAGAAAACGAGTGTAGAGTAATAATACATTGTTATTAAACTGT 2321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86541036640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5