BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14890.1
Length=2646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325952 jgi|Araly1|325952|fgenesh1_pm.C_scaffold_6001172 2213 0.0
> Ahg325952 jgi|Araly1|325952|fgenesh1_pm.C_scaffold_6001172
Length=2115
Score = 2213 bits (1198), Expect = 0.0
Identities = 1388/1480 (94%), Gaps = 12/1480 (1%)
Strand=Plus/Plus
Query 108 ATGAGGAAAAATGCAAAtttgttgattttgtttatgattttcatgtttttcttttgtGGG 167
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGAGGAAATATGCAAATTTGTTGATTTTGTCTGTGATTTTCATGTTTTTCTTTTGTGGG 60
Query 168 TTATCCTCAGTTTCAGCTAAACCTCCTCCTGTTAAGATTGTAAGTGGGCTTGTGACAAAT 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATCCTCAGTTTCAGCTAAACCTCCTCCTGTTAAGATTGTAAGTGGGCTTGTGACAAAC 120
Query 228 GTAGCATCGATACTCTGGAAATGGTTATGGTCTCTTCAAACATCCACAACCACAACAACC 287
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTAGCATCAATTCTCTGGAAATGGTTATGGTCTCTTCAAACATCCTCAACCACAACAACC 180
Query 288 ACCACAAAATCTGGTGTTTCTAGCCGTTCGATGGTGAAATACGAAAGTGGATATAACATG 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCACAAAATCTGGTGTTTCTAGCCGTTCGATGGTGAAATACGAAAGTGGATATAACATC 240
Query 348 GAGACAGTTTTTGATGGAAGTAAGCTTGGGATTGAGCCCTATGCGATTGAAGTTTCCCCT 407
|||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 241 GAGACAGTGTTTGATGGAAGTAAGCTTGGCATTGAGCCATATGCAATTGAAGTTTCCCCT 300
Query 408 AATGGAGGAGAGCTTATTGTCTTGGATTCTGAGAACAGTAACATCCACAAAATCTCCATG 467
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 301 AATGGAGGAGAGCTTATTGTCTTGGATTCTGAGAATAGTAATATCCACAAAATCTCCATG 360
Query 468 CCTCTTTCTAGATATGGTAAACCAAAGCTACTCTCTGGTTCACAAGAAGGCTACACAGGA 527
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CCTCTTTCTAGATATGCTAAACCAAAGCTAGTCTCTGGTTCACAAGAAGGCTACACAGGA 420
Query 528 CATGTCGATGGGAAA-CTCAAAGAAGCGAGAATGAATCGTCCTCGAGGATTAGCCATGGA 586
|| |||||| ||||| ||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 421 CACGTCGAT-GGAAAGCTCAAAGAAGCGAAAATGAATCGTCCTCGAGGCCTAGCCATCGA 479
Query 587 CGACAGGGGGAACATCTACGTCGCCGATACTATCAATATGGCCATACGCAAGATCAGCGA 646
|||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 480 CGACAGTGGAAACATCTACGTCGCCGATACTAACAATATGGCCATACGGAAGATCAGCGA 539
Query 647 TGACGGAGTCTCAACCATCGCCGCTGGAGGAAGATGGAGCGGTGGATCTAAAGAGGAGTC 706
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CGACGGAGTCTCAACCATCACCGCCGGAGGAAGATGGAGCGGTGGATCTAAAGAGGAGTC 599
Query 707 AATGAGATTCTCCGATGACTTTGATTTAATATATGTCTCTTCAAGCTGCTCTCT-TCTAG 765
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||
Sbjct 600 AATGAGATTCTCCGATGACTTTGATTTGATATACGTCTCTTCAAGCTGCTCTCTAT-TAG 658
Query 766 TCATTGATCGAGGGAATCAATTGATTAAAGAGATTCAGCTTCACGATCATGACTGTTCTC 825
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 659 TCATTGATCGAGGGAATCAAATGATTAAAGAGATTCAGCTTCATGATCACGACTGTTCTC 718
Query 826 AACCGGAACCCGACACAGATAGTCTCCATCTTGGAACCGCTTTGCTGGTTGCTGCTGTGT 885
| | ||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 719 ATCAGGAACCCGACACAGATAATCTCCATCTTGGAACAGCTTTGCTTGTAGCTGCTGTGT 778
Query 886 TCTTTGGGTATATGTTAGCATTATTAGTTCGTAGGGTACGATCGCTGTTCTCTTCGTCTA 945
||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||
Sbjct 779 TCTTTGGATATATGTTTGCATTATTAGTACGTAGAGTACGATCGTTGTTCTCTTCATCTG 838
Query 946 GCCATGATACTAAGAGTAAGAGACATGTAGCAACACCGAGCATGACAATGGCTCCGTACC 1005
| |||| | | | | |||||| |||||||||| |||||||||||| |||||||| ||||
Sbjct 839 GTCATG--A-T-A-A-TAAGAGGCATGTAGCAAAACCGAGCATGACTATGGCTCCATACC 892
Query 1006 AACGTTATCCAAGACCGGTACGACAGCCATTAATCCCACCTCAACATGAATCGGAAAAAG 1065
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 893 AACGTTATCCAAGACCGGTTCGACAGCCCTTAATCCCACCTCAACATGAACCGGAAAAAG 952
Query 1066 AAGAAGGATTTCTCGGTTCGCTTGGAAAGCTAGTCGTGAAAACCGGTTCTTCGGTTTCCG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AAGAAGGATTTCTCGGTTCGCTTGGAAAGCTAGTCGTGAAAACCGGTTCTTCGGTTTCCG 1012
Query 1126 AGATGATGTCCGGTTCTAGAAATGTAATTCCCCCAAACTTTCATCAGTACCACCATCAGC 1185
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1013 AGATGATGTCCGGTTCCAGAAATGTAATCCCCCCTAACTTTCATCAGTACCACCATCAGC 1072
Query 1186 AAGAACCGAACCAATGGCCGGTACAAGAGAGTT-TCGCTATACCGGAAGAAGATGGACCA 1244
||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1073 AAGAACCGAACCAATGGCCGGTACAAGAGAGCTAT-GCTATACCGGAAGAAGATGGACCG 1131
Query 1245 CCAGCTTTAGAACCGAGATCAGGTACAAATCCAGATAAACCCTACCTTAGAGCACAAGGA 1304
|| ||||||||||||||| |||| |||||||| ||||||||||| || ||||||||||||
Sbjct 1132 CCGGCTTTAGAACCGAGACCAGGCACAAATCCGGATAAACCCTATCTCAGAGCACAAGGA 1191
Query 1305 ACCAACCAAAACCGGTCTTATTACCAAGACTATGATCAATACCAAAACCAGCAGAAACGC 1364
|||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1192 ACCAGCCAAAACCGGTCTTATTACCAAGACTATGACCAGTACCAAAACCAGCAGAAACGA 1251
Query 1365 AATGTGAACGATACAGCGTCGTTCGAAGATAACCGAGAGAAGAACGAGATTGTTTTTGGG 1424
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1252 AATGTGAACGATACTGCGTCGTTCGAAGATAATCGAGAGAAGAGCGAGATTGTGTTTGGG 1311
Query 1425 GCAGTTCAGGAGCAGGACGGTCGCCGAGAAGCCATGGTGATCAAGGCCGTTGATTTCAAC 1484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1312 GCAGTTCAGGAGCAGGACGGTCGCCGGGAAGCCATGGTGATCAAGGCCGTTGATTTCAAC 1371
Query 1485 GAAGCCATTAACGATCAGCGCAATCTACGGCCCAGAATTAATTATATGGGATATTCTTCA 1544
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1372 GAAGCCATAAACGATCAGCGAAATCTACGGCCTAGAATTAATTATATGGGATATTCTTCT 1431
Query 1545 CAATTACCGGGACTAACGGCTTACTGCACCGACTTAACAA 1584
|||||||||||||||||||||| ||||||||||||||||
Sbjct 1432 CAATTACCGGGACTAACGGCTTTTTGCACCGACTTAACAA 1471
Score = 926 bits (501), Expect = 0.0
Identities = 559/586 (95%), Gaps = 7/586 (1%)
Strand=Plus/Plus
Query 1789 CTCTGTATTCATCTCTCTCCCTTTCTCTTAATCTT-TACGATC-TTTCTCAAAATCAATC 1846
||||||||||||||||| ||||||||||||||||| | ||||| |||||| ||||||||
Sbjct 1535 CTCTGTATTCATCTCTCACCCTTTCTCTTAATCTTCT-CGATCTTTTCTC-AAATCAATT 1592
Query 1847 TCATTGTTTCATGGGCCTTGAATCTTTTCCGATCTCTGAAATGGACGCGACCGATGAAAT 1906
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TCATTGTTTCATGGGGCTTCAATCTTTTCCGATCTCTGAAATGGACGCGACCGATGAAAT 1652
Query 1907 GCACGAAGCCATGTTCGCGAAACGAGGTTGTTGTTTTATCCTCCCTTGTCTTGGATCATC 1966
| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1653 GTACGAAGCGATGTTCGCGAAACGAGGTTGTTGTTTTATTCTTCCTTGTCTTGGATCATC 1712
Query 1967 TCAGCCATCTGGTCCTAACGGATCTGTGTGGTGGCAACGAATCAGAACCGTTGATAAATT 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1713 TCAGCCATCTGGTCCTAACGGATCTGTGTGGTGGCAACGAATCAGAACCGTTGATGAATT 1772
Query 2027 GGAGCCTGATGAGCGGTGGTGGGTCTCTGGGTGGATGAAGATGAGGGAATGGTCTGAGAT 2086
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1773 GGAGCCTGATGAGCGGTGGTGGGTCTCCGGGTGGATGAAGATGAGGGAATGGTCTGAGCT 1832
Query 2087 CGTAGCTGGTCCCAAATGGAAAACTTTTATCCGTCGCTTTGGACGTAATCACTGCTGCAA 2146
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 CGTGGCTGGTCCCAAATGGAAAACTTTTATCCGTCGCTTTGGACGTAATCACTGCTG--- 1889
Query 2147 CGGTGGCATTGACGGTGGTTGTAATCGGCCGGAGCATGTTAGTTTCCGGTACGATTCGTG 2206
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1890 CGGTGGCGTTGACGGTGGTTGTAATCGGCCGGAGCATGTTAGTTTCCGGTATGATTCGTG 1949
Query 2207 GAGTTACTCGTTGAATTTCGACGACGGGAAACAGACGGGTCATTTCGAAGATGAGTTTCC 2266
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1950 GAGTTACTCTTTGAATTTCGACGACGGAAAACAGACGGGTCATTTTGAAGATGAGTTTCC 2009
Query 2267 TTACCGTGATTACTCGATGAGGTTCGCTGCGCCGTCTCTGCCGGTTTCTACTAAATGCTC 2326
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2010 TTATCGTGATTACTCGATGAGGTTCGCCGCCCCGTCTCTGCCGGTTTCTACTAAATGCTC 2069
Query 2327 CATTGATTTCGACAATGATAACCACGCGCCGTCGCTGTTTAAGTGA 2372
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 CATTGATTTCGACAATGATAACCACGCGCCGTCGCTGTTTAAGTGA 2115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99796441900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5