BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14900.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488332 jgi|Araly1|488332|fgenesh2_kg.6__1466__AT5G14900.1 1315 0.0
Ahg349295 jgi|Araly1|349295|fgenesh1_pg.C_scaffold_5002687 167 1e-40
> Ahg488332 jgi|Araly1|488332|fgenesh2_kg.6__1466__AT5G14900.1
Length=903
Score = 1315 bits (712), Expect = 0.0
Identities = 832/891 (93%), Gaps = 4/891 (0%)
Strand=Plus/Plus
Query 5 CAAACCTTGCAAACACAGTTCTGACCTTGAAAGGACTTAGTGTGAAAAACTTGGTACGCT 64
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2 CAAACCTTGCAAACACAGTTCTGACCTTGAAAAGACTGGGTGTGAAAAACTTGGTACGCT 61
Query 65 TCGATCTTATAGATTCTCCTGCTCCTGATACCCTCGCTCGGGCCTTGGACGATTTGTATC 124
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 62 TCGATCTTATGGATGCTCCTGCTCCTGAGACCCTCGCTCGGGCCTTGGACGATTTGTATC 121
Query 125 ATTTGGGAGCACTTGATGATGACTGTAACTTGACAAAGACAGGTGAGATGATGAGTGAGT 184
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 122 ATTTGGGAGCACTAGATGATGAAGGTAACTTGACAAAGACAGGTGAGATGATGAGTGAGT 181
Query 185 TTCCTTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAA 244
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATCCCTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAA 241
Query 245 ACGAGATTCTTTCGATTTCTGCGATGTTATCAGTACCAAATTGTTTCATCAGGCCAAGAG 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACGAGATTCTTTCGATTTCCGCGATGTTATCAGTACCAAATTGTTTCATCAGGCCAAGAG 301
Query 305 GAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGCTTTGCACACATTGATGGAGATC 364
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 302 GAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGTTTTGCACACATTGATGGAGACC 361
Query 365 ATCTCACACTTTTGAATTTGTTCCATGCTTTCTTGCAAAACAACCAAGACCCAAATTGGT 424
| |||||||| |||||| ||||||| |||||||||||||||||||||||| || ||||||
Sbjct 362 ACCTCACACTCTTGAATGTGTTCCACGCTTTCTTGCAAAACAACCAAGACTCAGATTGGT 421
Query 425 GCT--GTACAAAGTTCATCAACTACAGAGCAATGAAGTCTGCAGTTAGTGTTAGAGAGCA 482
||| | | ||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 422 GCTACGAA-AAA-TTCATAAACTACAGAGCAATGAAGTCTGCAGTTAGTGTAAGAGAGCA 479
Query 483 GTTGGTCCGGATCATGTTGAGGTTTCAGATTAAGTTGTGTAGCCCTGATTTCAACAGCAG 542
| ||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||| |
Sbjct 480 GCTGGTCCGGATCATGTCGAGGTTTCAGATTAAGTTGTGCAGCCCAGGTTTCAACAGCCG 539
Query 543 GGACTACTACGTCAACATAAGAAAGGCCTTGCTTGCAGGTTATTTCATGCAAGTGGCTCA 602
||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 540 CGACTATTACGTCAACATTAGAAAGGCCTTGCTTGCCGGTTATTTCATGCAGGTGGCTCA 599
Query 603 CCTAGAACGCACTGGCCACTACTTGACTTTCAGAGATAAGGATGACCAAGTGGTGCACTT 662
|||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct 600 CCTAGAACGCACTGGCCATTACTTGACGTTCAGAGATAAGGACGACCAAGTGGTTCACTT 659
Query 663 GCATCCTTCCAATTGCTTGGATCACAAACCAGAGTGGGTAGTTTACAACGAATACGTTTT 722
|||||| || |||||| ||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 660 GCATCCATCTAATTGCCTGGATCACAAACCGGAGTGGGTGGTTTACAACGAATATGTTTT 719
Query 723 CACTAGCCGAAATTTCATCCGAACCGTCACACATATTCGCGGTGAATGGCTTGTAGATGT 782
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 720 CACTAGCCGAAATTTCATCCGAACTGTCACACATATTCGTGGTGAATGGCTAGTAGATGT 779
Query 783 TGCACCACATTACTATAAGCTTGCTAACTTTCCCAGTTCTGAGGCCAAACGAGTTCTTGA 842
|||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||| |
Sbjct 780 TGCACCACATTACTATAAGCTTGCCAACTTTCCCAATTCTGAGGCTAAACGAGTACTTCA 839
Query 843 AAGGCACTATAAGAAGAGAAAACTGTCAGAAGAGAGGAGTTGTAAATTGTA 893
|| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 840 AAAGCACTATAAGAAGAGGAAACTGTCAGAAGAAAGGAGTTGTAAATTGTA 890
> Ahg349295 jgi|Araly1|349295|fgenesh1_pg.C_scaffold_5002687
Length=2061
Score = 167 bits (90), Expect = 1e-40
Identities = 117/130 (90%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 149 GTAACTTGACAAAGACAGGTGAGATGATGAGTGAGTTTCCTTTAGACCCACAGATGGCAA 208
||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||
Sbjct 1202 GTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCAA 1261
Query 209 AGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAAACGAGATTCTTTC-GATTTCTGCG 267
|||||||||||||||||||| ||||||||||||||||||||||||| || | |||| ||
Sbjct 1262 AGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTCAG-TTTCAGCC 1320
Query 268 ATGTTATCAG 277
||| | ||||
Sbjct 1321 ATGCTCTCAG 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5