BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14910.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488333 jgi|Araly1|488333|fgenesh2_kg.6__1467__AT5G14910.1 1035 0.0
> Ahg488333 jgi|Araly1|488333|fgenesh2_kg.6__1467__AT5G14910.1
Length=732
Score = 1035 bits (560), Expect = 0.0
Identities = 645/686 (94%), Gaps = 5/686 (1%)
Strand=Plus/Plus
Query 59 CACAACCTTATCGAGTGAAAGAAGATTGGGTCAGTAGTGAAAAATGGCGTCGATTGCAGC 118
||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||| |||||
Sbjct 1 CACAACCTTATCGAGTG-AAGAAGATTTGGTTAGTAGCGAAAAATGGCGTCGATCGCAGC 59
Query 119 TTCTTCTACCTTTCACTCGTTTTGCAGAACCAAAAGCCCTAATCTTTCTTCGACCCACCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TTCTTCTACCTTTCACTCGTTTTGCAGAACCAAAAGCCCTAATCTTTCTTCGACCCATCT 119
Query 179 TCTTCCTTTGTCGAAAAACCTCAACTTTCGGACCAGAGCTATCGGAAATAGCCGCAA-TT 237
||| |||||||| ||||| ||||||||| |||||||||||||||||||||||| || ||
Sbjct 120 TCTCCCTTTGTCTAAAAATCTCAACTTTAAGACCAGAGCTATCGGAAATAGCCG-AATTT 178
Query 238 GCAGTTTTGCTGGGTTTATAAAACAAAATCGCCTTGGATTGAGGAAGCTTTCGTCTATTG 297
||||||||||||||||||| ||||| ||||||||||| || | |||||||||||| |||
Sbjct 179 GCAGTTTTGCTGGGTTTATGAAACAGAATCGCCTTGGGTTAATGAAGCTTTCGTCGGTTG 238
Query 298 GAGAAGGAGGAGAAGGTGTCGCTGTCGCAGAGGAGCAACCGCAAGAGACTGTCTCTGTTC 357
||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 239 GAGAAGGAGGAGAAGATGTCGCAGTCGCAGAGGAGCAACAGCAAGAGACTGTCTCTGTTC 298
Query 358 CTGTCTCTCCTTCAGACATGCTCACCATGTTTTTCCAGGCTGATGGAACTTTGAACGAAG 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 CTGTCTCTCCTTCAGACATGCTCACCATGTTTTTTCAGGCTGATGGAACTTTGAACGAAG 358
Query 418 CAGCTATTCCTAATGTGACAAGGGCCTTACAGGATATTGATGGAGTTTCCAATTTAAAGG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAGCTATTCCTAATGTGACAAGGGCCTTACAGGATATTGATGGAGTTTCCAATTTAAAGG 418
Query 478 TTCAGGTTTCTGAAGGTGTTGCCGTCGTTGAGCTTTTGAAGCAAACAACGGTTCAAGCAA 537
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 419 TTCAGGTTTCTGAAGGTGTTGCCGTCGTTGAGCTTTCAAAGCAAACGACGGTTCAAGCAA 478
Query 538 CAGGAGTGGCGTCAAACTTGGTGGAGACTATACAAGGAGCTGGATTTAAGTTACAGACTT 597
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CAGGAGTGGCGTCAAGCTTGGTGGAGACTATACAAGGAGCTGGATTTAAATTACAGACTT 538
Query 598 TGAATCTGAGTTTTGAAGATGACGATGAGGTTCTTGTCTAGTGAAATCATCCTTT-TCCT 656
||||| |||| ||||||||||| ||||| |||||| |||||| |||||||| ||| ||||
Sbjct 539 TGAATTTGAGCTTTGAAGATGAAGATGAAGTTCTTATCTAGTTAAATCATC-TTTCTCCT 597
Query 657 CCATTTTGTGATTAAAGAAACTCATAATGTTCAATTCTAGGGATAATTTCTTTCATTTGT 716
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 598 CCATTTTGTGATTAAAGAAACACATAATGTTCAATTTTAGGGATACTTTCTTTCATTTGT 657
Query 717 TCCTCTAAAGAAAACAAATGTGGTAA 742
|||||| |||||||||||||||||||
Sbjct 658 TCCTCTCAAGAAAACAAATGTGGTAA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5