BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14930.2
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488337 jgi|Araly1|488337|fgenesh2_kg.6__1471__AT5G14930.2 1908 0.0
> Ahg488337 jgi|Araly1|488337|fgenesh2_kg.6__1471__AT5G14930.2
Length=1653
Score = 1908 bits (1033), Expect = 0.0
Identities = 1341/1485 (90%), Gaps = 40/1485 (3%)
Strand=Plus/Plus
Query 265 aaGATTCAGGTC-TAGAATTTC-AGATTCACCGAGAAGAGAAATTCACACTTGTGGTTTT 322
|||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 192 AAGATTCAGGTCTTGGAA--TCAAGATTTACCGAGAAGAGAAATTCACACTTGTGGTTTT 249
Query 323 TAG-CGCACCACCGATCTGCAGAAGTAGTAGCTCTGATTCTACTCTTCTTCATGTGAAAG 381
| | |||||||||| | | || | ||||||||||||||||||||||||| || |||||
Sbjct 250 T-GTCGCACCACCGGTTTTCA-CA--AGTAGCTCTGATTCTACTCTTCTTCCTGGGAAAG 305
Query 382 ATAAA-GAAAATCC-TTTCCCATTCCTCTGCTCCGAGAACAACCCATCATTCTCTCTTCA 439
| ||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 306 A-AAATGAAAATCCGTTT-CCATTCCTCTGCTCCGAGATTAACCCATCATTCTCTCTTCA 363
Query 440 CACACCTGCTTTTAACCTTTTTACCTCTGCTTCTACTAGTCTCACTTACCTCAAATCAGA 499
|||||||||||| |||||||| |||||||||| || |||||||| ||||| |||||||
Sbjct 364 CACACCTGCTTTAAACCTTTTCACCTCTGCTTATAAAAGTCTCACCAACCTCCAATCAGA 423
Query 500 GTTGCTCCAAACGCTCAAGTCTGAGAAACCGGTGATCATCACCGGAGCTGCGTTAGGAGG 559
|||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 424 GTTGCTTCAAACGCTTAAGTCTGAGAAACCGGTGATCATCACTGGAGCTTCGTTAGGAGG 483
Query 560 GTCTGTTGCATCTCTCTATACGCTATGGCTTCTTGAAACCATCGAACCGACGTTAAAACG 619
||| ||||||||||||||||||||||||||||| || |||||||| |||| |||||||||
Sbjct 484 GTCCGTTGCATCTCTCTATACGCTATGGCTTCTAGATACCATCGACCCGAAGTTAAAACG 543
Query 620 TCCCTTATGCATCACATTTGGCTCGCCATTGATCGGAGACGCTTCTCTTCAACAGATTCT 679
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 544 TCCCTTATGCATCACATTTGGCTCGCCATTGATCGGAGACGTTTCTCTTCAAGAGATTCT 603
Query 680 TGAGAACTCTGTGAGGAATTCATGTTTCCTTCACGT--T-GTATCAGCACAAACTCGTAT 736
|||||| ||||||||||||||||||||||||||||| | | | ||||||||||||| ||
Sbjct 604 TGAGAATTCTGTGAGGAATTCATGTTTCCTTCACGTGGTGGCAGCAGCACAAACTCGCAT 663
Query 737 CAAGAT-GGACTTCTTCAAACCTTTTGGAACGTTTTTGATCTGTTTTGATTCCGGATGTG 795
|||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 664 CAAG-TCGGATTTCTTCAAACCTTTTGGAACGTTTTTGATCTGTTTTGACTCCGGATGTG 722
Query 796 TTTGCATCGAGGACCATGTGGCGGTCACAGAGTTGCTAAACGGTGTTCATGATTCGGGTC 855
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 723 TTTGCATCGAGGACCCTGAGGCGGTCATAGAGTTGCTAAACGGTGTTCATGATTCGGAAC 782
Query 856 TAGTAGACTACAGCCAAGTTCTAAATCGTCTTGACCAATCCATGTTGTCTCTGGCGGATT 915
|||||||||| ||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct 783 AAGTAGACTACGGCCAAGTTCTACGTCGTCTGGACCAATCCATGTTGTCTATAGCGGATT 842
Query 916 CAAGATTGATCCCTGAAGATGTTATCAAAGGAATAGAGAAACGTGCAGAAATGAAAAATC 975
||| ||| |||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct 843 CAACATTCATCCCTGAAGCTGTTATCAAAGGAATGGAGGAACGTGCGGAAATGAAAGATC 902
Query 976 TGCGATTTGATATGATGTTTAAGAAACTAAACGACATGAAGATATCGATGGCTTATATAG 1035
||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 903 TGCGATTTG--AT-ATGTTTAAGAAATTAAACGACATGAAGATATCGATGGCGTATATAG 959
Query 1036 AGTGGTACAAAAAGAAATGCAAGG-AGGTCAAGATCGGTTACTACGATCGGTTCAAGACT 1094
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 960 AGTGGTACAAAAAGGAATGC-AGGAAGGTCAAGATCGGTTACTACGATCGGTTCAAGACT 1018
Query 1095 CAGCTCGCGTTTCCGTCGAAAGAGTTTGATATAAACATCAAGAATCACCACAAATCAGAG 1154
|| | |||||||||||| |||||||||||||| ||||||||| ||||||| ||||
Sbjct 1019 CAACACGCGTTTCCGTCTTCGGAGTTTGATATAAAAATCAAGAAT---CACAAATTAGAG 1075
Query 1155 CTAAACCGTTTTTGGAAATCAGTAGTTGAAGAAGTAGAGAGGAGGCCGCAGAGCGATGCA 1214
|||||||||| ||||||||||| |||||||||||||||| || ||||||||||||| |
Sbjct 1076 CTAAACCGTTACTGGAAATCAGTGGTTGAAGAAGTAGAGAAGAAGCCGCAGAGCGATATA 1135
Query 1215 TCGATTCTCAAGAGACGGTTTCTATTCTCGGGGAACAATTACAGACGGATGATCGAACCA 1274
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 1136 TCGATTCTCAAGAGACGGTTTCTATACTCTGGGAACAATTACAGACGGATGATTGAACCG 1195
Query 1275 CTCGATATTGCTGAATATTACCTCGAGGGTCGGAAAGAGTATCGAA-CTACGGGAAGGTC 1333
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1196 CTCGATATTGCTGAATATTACCTCGAGGGTGGGAAAGAGTATCGAACCT-CGGGAAGGTC 1254
Query 1334 TCACCACTATGTTATGCTTGAGAAATGGTTTGGAATGGAATCGATATTAATAGAAAAGGA 1393
|| ||| ||||||||||| ||||||||||||||||| | || ||| |||||||||||
Sbjct 1255 TCGCCAATATGTTATGCTCGAGAAATGGTTTGGAAT-G----GA-ATTGATAGAAAAGGA 1308
Query 1394 AAGATGCAAAAAGAGAGATTTGAGTGATCTTTTGACGTTTGATTCTTGTTTTTGGGCTGA 1453
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1309 AAGATGCAAAAACAGAGATTTGAGTGATCTTTTAACGTTTGATTCTTGTTTTTGGGCTGA 1368
Query 1454 AGTTGAGGATTCGTTGATTGTAATTAATCAGTTGAATACAACTGTGGGGATGAGAGACGA 1513
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 1369 AGTTGAGGATTCGTTGATTGTAATTAATCAGCTGAATACAACCGTGGGGATGAGTGACGA 1428
Query 1514 TGTGAGAGAGGTATTGACTAGAAAACTCGTGGAGTTTGAGGGATACGTGTGGGAGATAAT 1573
|| |||||| | | |||| |||||||||||| ||||| ||| ||||||||||||||| ||
Sbjct 1429 TGCGAGAGAAGCACTGACCAGAAAACTCGTGAAGTTTAAGGAATACGTGTGGGAGATGAT 1488
Query 1574 CACAAAACGTGAGGTTTCGCCGGAGATATTCTTAGAGGAAAGCAGTTTCATGAAGTGGTG 1633
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1489 CAGAAAACGTGAGGTTTCGCCGGAGATTTTCTTAGAGAAAAGCAGTTTCATGAAGTGGTG 1548
Query 1634 GAAAGAGTACAAAAAGATCAAAGGCTTTAATTCT-----T-CATACTTGACCGAGTTTAT 1687
|||||||||||||||||||||||||| ||||||| | ||||||| ||||||| |||
Sbjct 1549 GAAAGAGTACAAAAAGATCAAAGGCTATAATTCTCCACCTTCATACTTCACCGAGTATAT 1608
Query 1688 GAACACCCGGAAGTACGAGAGTTATGGTAAGTCACAATAATGGAA 1732
||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 1609 GAACACCGGGAAGTACGAGAGTTATGGTAAGCCGCAATAATGGAA 1653
Score = 169 bits (91), Expect = 9e-41
Identities = 131/149 (88%), Gaps = 8/149 (5%)
Strand=Plus/Plus
Query 103 CAGCTCACGCCATGGAG------TCTTCTTCTTCACTAAAAGGTTCTGCACTTGGGAAGC 156
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 57 CAGCTCACGCCATGGAGTCTTCTTCTTCTTCTTCACTAAAATGTTCTGCACTTGGGAAGC 116
Query 157 TTGTGGTGACCTCTGGTCTCTTACATAGCTCATGGAGTAAGATCTTGGAGATACATA-AC 215
||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 117 TTGTGTTGAGCTCTGGTCTCTTACACAGCTCATGGAGTAAGATCTGGGAGATACATACAT 176
Query 216 CCACCTTATTCGAATCATGATCCAGGTCT 244
| ||| || |||||||| ||| |||||||
Sbjct 177 C-ACCCTACTCGAATCAAGATTCAGGTCT 204
Score = 73.1 bits (39), Expect = 7e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 6 ACTCTCGTTCTCAGACATTTATTTCTCTCAGTCTTACAATATAAATTT 53
|||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 1 ACTCTCATTTTCAGACATTTATTTCTCTCAGTCTTACAATATAAGTTT 48
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71876292315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5