BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14930.2 Length=1913 Score E Sequences producing significant alignments: (Bits) Value Ahg488337 jgi|Araly1|488337|fgenesh2_kg.6__1471__AT5G14930.2 1908 0.0 > Ahg488337 jgi|Araly1|488337|fgenesh2_kg.6__1471__AT5G14930.2 Length=1653 Score = 1908 bits (1033), Expect = 0.0 Identities = 1341/1485 (90%), Gaps = 40/1485 (3%) Strand=Plus/Plus Query 265 aaGATTCAGGTC-TAGAATTTC-AGATTCACCGAGAAGAGAAATTCACACTTGTGGTTTT 322 |||||||||||| | ||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 192 AAGATTCAGGTCTTGGAA--TCAAGATTTACCGAGAAGAGAAATTCACACTTGTGGTTTT 249 Query 323 TAG-CGCACCACCGATCTGCAGAAGTAGTAGCTCTGATTCTACTCTTCTTCATGTGAAAG 381 | | |||||||||| | | || | ||||||||||||||||||||||||| || ||||| Sbjct 250 T-GTCGCACCACCGGTTTTCA-CA--AGTAGCTCTGATTCTACTCTTCTTCCTGGGAAAG 305 Query 382 ATAAA-GAAAATCC-TTTCCCATTCCTCTGCTCCGAGAACAACCCATCATTCTCTCTTCA 439 | ||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 306 A-AAATGAAAATCCGTTT-CCATTCCTCTGCTCCGAGATTAACCCATCATTCTCTCTTCA 363 Query 440 CACACCTGCTTTTAACCTTTTTACCTCTGCTTCTACTAGTCTCACTTACCTCAAATCAGA 499 |||||||||||| |||||||| |||||||||| || |||||||| ||||| ||||||| Sbjct 364 CACACCTGCTTTAAACCTTTTCACCTCTGCTTATAAAAGTCTCACCAACCTCCAATCAGA 423 Query 500 GTTGCTCCAAACGCTCAAGTCTGAGAAACCGGTGATCATCACCGGAGCTGCGTTAGGAGG 559 |||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||| Sbjct 424 GTTGCTTCAAACGCTTAAGTCTGAGAAACCGGTGATCATCACTGGAGCTTCGTTAGGAGG 483 Query 560 GTCTGTTGCATCTCTCTATACGCTATGGCTTCTTGAAACCATCGAACCGACGTTAAAACG 619 ||| ||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| Sbjct 484 GTCCGTTGCATCTCTCTATACGCTATGGCTTCTAGATACCATCGACCCGAAGTTAAAACG 543 Query 620 TCCCTTATGCATCACATTTGGCTCGCCATTGATCGGAGACGCTTCTCTTCAACAGATTCT 679 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 544 TCCCTTATGCATCACATTTGGCTCGCCATTGATCGGAGACGTTTCTCTTCAAGAGATTCT 603 Query 680 TGAGAACTCTGTGAGGAATTCATGTTTCCTTCACGT--T-GTATCAGCACAAACTCGTAT 736 |||||| ||||||||||||||||||||||||||||| | | | ||||||||||||| || Sbjct 604 TGAGAATTCTGTGAGGAATTCATGTTTCCTTCACGTGGTGGCAGCAGCACAAACTCGCAT 663 Query 737 CAAGAT-GGACTTCTTCAAACCTTTTGGAACGTTTTTGATCTGTTTTGATTCCGGATGTG 795 |||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 664 CAAG-TCGGATTTCTTCAAACCTTTTGGAACGTTTTTGATCTGTTTTGACTCCGGATGTG 722 Query 796 TTTGCATCGAGGACCATGTGGCGGTCACAGAGTTGCTAAACGGTGTTCATGATTCGGGTC 855 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| | Sbjct 723 TTTGCATCGAGGACCCTGAGGCGGTCATAGAGTTGCTAAACGGTGTTCATGATTCGGAAC 782 Query 856 TAGTAGACTACAGCCAAGTTCTAAATCGTCTTGACCAATCCATGTTGTCTCTGGCGGATT 915 |||||||||| ||||||||||| |||||| |||||||||||||||||| | ||||||| Sbjct 783 AAGTAGACTACGGCCAAGTTCTACGTCGTCTGGACCAATCCATGTTGTCTATAGCGGATT 842 Query 916 CAAGATTGATCCCTGAAGATGTTATCAAAGGAATAGAGAAACGTGCAGAAATGAAAAATC 975 ||| ||| |||||||||| ||||||||||||||| ||| ||||||| ||||||||| ||| Sbjct 843 CAACATTCATCCCTGAAGCTGTTATCAAAGGAATGGAGGAACGTGCGGAAATGAAAGATC 902 Query 976 TGCGATTTGATATGATGTTTAAGAAACTAAACGACATGAAGATATCGATGGCTTATATAG 1035 ||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 903 TGCGATTTG--AT-ATGTTTAAGAAATTAAACGACATGAAGATATCGATGGCGTATATAG 959 Query 1036 AGTGGTACAAAAAGAAATGCAAGG-AGGTCAAGATCGGTTACTACGATCGGTTCAAGACT 1094 |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 960 AGTGGTACAAAAAGGAATGC-AGGAAGGTCAAGATCGGTTACTACGATCGGTTCAAGACT 1018 Query 1095 CAGCTCGCGTTTCCGTCGAAAGAGTTTGATATAAACATCAAGAATCACCACAAATCAGAG 1154 || | |||||||||||| |||||||||||||| ||||||||| ||||||| |||| Sbjct 1019 CAACACGCGTTTCCGTCTTCGGAGTTTGATATAAAAATCAAGAAT---CACAAATTAGAG 1075 Query 1155 CTAAACCGTTTTTGGAAATCAGTAGTTGAAGAAGTAGAGAGGAGGCCGCAGAGCGATGCA 1214 |||||||||| ||||||||||| |||||||||||||||| || ||||||||||||| | Sbjct 1076 CTAAACCGTTACTGGAAATCAGTGGTTGAAGAAGTAGAGAAGAAGCCGCAGAGCGATATA 1135 Query 1215 TCGATTCTCAAGAGACGGTTTCTATTCTCGGGGAACAATTACAGACGGATGATCGAACCA 1274 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct 1136 TCGATTCTCAAGAGACGGTTTCTATACTCTGGGAACAATTACAGACGGATGATTGAACCG 1195 Query 1275 CTCGATATTGCTGAATATTACCTCGAGGGTCGGAAAGAGTATCGAA-CTACGGGAAGGTC 1333 |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| Sbjct 1196 CTCGATATTGCTGAATATTACCTCGAGGGTGGGAAAGAGTATCGAACCT-CGGGAAGGTC 1254 Query 1334 TCACCACTATGTTATGCTTGAGAAATGGTTTGGAATGGAATCGATATTAATAGAAAAGGA 1393 || ||| ||||||||||| ||||||||||||||||| | || ||| ||||||||||| Sbjct 1255 TCGCCAATATGTTATGCTCGAGAAATGGTTTGGAAT-G----GA-ATTGATAGAAAAGGA 1308 Query 1394 AAGATGCAAAAAGAGAGATTTGAGTGATCTTTTGACGTTTGATTCTTGTTTTTGGGCTGA 1453 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1309 AAGATGCAAAAACAGAGATTTGAGTGATCTTTTAACGTTTGATTCTTGTTTTTGGGCTGA 1368 Query 1454 AGTTGAGGATTCGTTGATTGTAATTAATCAGTTGAATACAACTGTGGGGATGAGAGACGA 1513 ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| Sbjct 1369 AGTTGAGGATTCGTTGATTGTAATTAATCAGCTGAATACAACCGTGGGGATGAGTGACGA 1428 Query 1514 TGTGAGAGAGGTATTGACTAGAAAACTCGTGGAGTTTGAGGGATACGTGTGGGAGATAAT 1573 || |||||| | | |||| |||||||||||| ||||| ||| ||||||||||||||| || Sbjct 1429 TGCGAGAGAAGCACTGACCAGAAAACTCGTGAAGTTTAAGGAATACGTGTGGGAGATGAT 1488 Query 1574 CACAAAACGTGAGGTTTCGCCGGAGATATTCTTAGAGGAAAGCAGTTTCATGAAGTGGTG 1633 || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 1489 CAGAAAACGTGAGGTTTCGCCGGAGATTTTCTTAGAGAAAAGCAGTTTCATGAAGTGGTG 1548 Query 1634 GAAAGAGTACAAAAAGATCAAAGGCTTTAATTCT-----T-CATACTTGACCGAGTTTAT 1687 |||||||||||||||||||||||||| ||||||| | ||||||| ||||||| ||| Sbjct 1549 GAAAGAGTACAAAAAGATCAAAGGCTATAATTCTCCACCTTCATACTTCACCGAGTATAT 1608 Query 1688 GAACACCCGGAAGTACGAGAGTTATGGTAAGTCACAATAATGGAA 1732 ||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct 1609 GAACACCGGGAAGTACGAGAGTTATGGTAAGCCGCAATAATGGAA 1653 Score = 169 bits (91), Expect = 9e-41 Identities = 131/149 (88%), Gaps = 8/149 (5%) Strand=Plus/Plus Query 103 CAGCTCACGCCATGGAG------TCTTCTTCTTCACTAAAAGGTTCTGCACTTGGGAAGC 156 ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 57 CAGCTCACGCCATGGAGTCTTCTTCTTCTTCTTCACTAAAATGTTCTGCACTTGGGAAGC 116 Query 157 TTGTGGTGACCTCTGGTCTCTTACATAGCTCATGGAGTAAGATCTTGGAGATACATA-AC 215 ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||| | Sbjct 117 TTGTGTTGAGCTCTGGTCTCTTACACAGCTCATGGAGTAAGATCTGGGAGATACATACAT 176 Query 216 CCACCTTATTCGAATCATGATCCAGGTCT 244 | ||| || |||||||| ||| ||||||| Sbjct 177 C-ACCCTACTCGAATCAAGATTCAGGTCT 204 Score = 73.1 bits (39), Expect = 7e-12 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 6 ACTCTCGTTCTCAGACATTTATTTCTCTCAGTCTTACAATATAAATTT 53 |||||| || |||||||||||||||||||||||||||||||||| ||| Sbjct 1 ACTCTCATTTTCAGACATTTATTTCTCTCAGTCTTACAATATAAGTTT 48 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71876292315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5