BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14940.1
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488338 jgi|Araly1|488338|fgenesh2_kg.6__1472__AT5G14940.1 2784 0.0
> Ahg488338 jgi|Araly1|488338|fgenesh2_kg.6__1472__AT5G14940.1
Length=1726
Score = 2784 bits (1507), Expect = 0.0
Identities = 1661/1734 (96%), Gaps = 15/1734 (1%)
Strand=Plus/Plus
Query 16 tctctctctTTATCTCCCTCAATacacacacacacacacaaacacaAGCTTTAATATACT 75
||| ||| ||| |||||||| | |||| |||| |||||||||||||||||||||||||
Sbjct 1 TCT-TCT-TTTCTCTCCCTC---A-ACACGCACAGACACAAACACAAGCTTTAATATACT 54
Query 76 CTCTTTTGATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGTAAATCTTGTGCTCTTCTCA 135
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 55 CTC-TTTGATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGCAAATCTTGTGCTCTTCTCA 113
Query 136 TAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACAT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACAT 173
Query 196 ATCTAACTGATGTAGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTGAACACTTGGA 255
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 174 ATCTAACTGATGTGGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTTAACACTTGGA 233
Query 256 GTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTTGCCGATTCTTATTGGGACA 315
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 234 GTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTCGCCGATTCTTATTGGGACA 293
Query 316 GATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACAT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACAT 353
Query 376 TTACGGCATTTGCTGGGTCACGTTCGACTACAAAAACAATCTCTCTTTACTTCCTCTACA 435
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 354 TTACGGCATATGCTGGGTCACGTTCCACTACAAAAACCATCTCTCTTTACTTCCTCTACA 413
Query 436 CTTCACTTTCCCTCGTCGCTCTAGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTG 495
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 414 CTTCACTCTCCCTCGTCGCTCTTGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTG 473
Query 496 GTGCTGACCAGCTCGACTACGACCTTGACCATGACAATGACCACGAGCCATCCTCAGAGA 555
||||||||||||||||| | ||||||||||| | | ||||||||||||||||||||||||
Sbjct 474 GTGCTGACCAGCTCGACCATGACCTTGACCAAGGCCATGACCACGAGCCATCCTCAGAGA 533
Query 556 ACAAAGAAGTCAAATCGAACCGCAAGACTCAGTTTTTCCAATGGTGGTATTTTGGTGTCT 615
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 534 ACAAAGAAGTCAAATCGAACCGCAAGACTAAGTTTTTCCAATGGTGGTACTTTGGTGTCT 593
Query 616 GCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTACATCCAAGACACGTTTGGATGGG 675
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 594 GCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTATATCCAAGACACGTTTGGTTGGG 653
Query 676 TTATCGGTTTTGCAATCCCAACCGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTG 735
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 654 TTATCGGTTTTGCAATCCCAACTGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTG 713
Query 736 GCTGCGGGGTCTATGTTTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAGGATAT 795
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 GCTGCGGGGTTTATGTCTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAAGATAT 773
Query 796 TAGAGATTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTTAACGACCACG 855
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 774 TAGAGAGTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTGAACGACCACG 833
Query 856 ATTTAAATGCCATGGAACTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACA 915
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ATTTGAATGCCATGGAGCTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACA 893
Query 916 CTGAAGC---TA--A-TACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAA 969
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTGAAGCTAATACTACTACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAA 953
Query 970 CCGGTTTTTCGGGGCTTGAAACCGTCAAGCTATTGCTTCGACTTTTACCTATATGGACGA 1029
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 954 CCGGTTTCTCAGGGCTTGAAACCGTCAAGCTATTGCTTCGGCTTTTACCTATATGGACGA 1013
Query 1030 TGCTTCTTATGTTTGCAGTTATATTCCAACAACCCGCGACCTTTTTCACAAAGCAAGGTA 1089
||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1014 TGCTTCTAATGTTTGCAGTCATATTCCAGCAACCCGCAACCTTTTTCACAAAGCAAGGTA 1073
Query 1090 TGACTATGAAGAGAAACATCGGACCAAACTTCAAGATCCCACCAGCAACACTACAAAGCA 1149
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1074 TGACTATGAAGAGAAACATCGGACCAAACTTCAAAATCCCACCCGCAACGCTACAAAGCA 1133
Query 1150 CTATCACTTTATCCATAATCCTTCTTATGCCCTTCTACGACAAAATCTTGATACCGATCG 1209
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1134 CAATCACTTTATCCATAATCCTTCTTATGCCCTTTTACGACAAAATCTTGATACCAATCG 1193
Query 1210 CCaaaaaactaacgaaaaacgaaaaGGGTATTTCTGTGAAGGAAAGAATGGGGATTGGGA 1269
|||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1194 CCAAAAAATTAACGAAAAACGAAAAAGGTATTTCCGTCAAGGAAAGAATGGGGATTGGGA 1253
Query 1270 TGTTCCTGTCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGA 1329
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGTTCCTATCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGA 1313
Query 1330 TAAGCAAAATGATGAAGACTACACCTAATTTGGACCCCG-TAAGCATATTGTGGCTCCTA 1388
||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||
Sbjct 1314 TAAGCAAAATGATGAAGACTACACCGAATTTGGA-TCCGTTGAGCATATTGTGGCTCCTA 1372
Query 1389 CCTCAGTACATTCTATTGGGAATCTCGGACATTTTCACAGTTGTTGGAATGCAAGAGTTC 1448
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1373 CCTCAATACATTCTATTGGGAATATCGGACATTTTCACGGTTGTTGGAATGCAAGAGTTC 1432
Query 1449 TTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTT 1492
Query 1509 TTCGGTGTGGGGAGTTTTGTGAGTGCTGCGTTGATTTCGATAATAGAGACTTACACGAGC 1568
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1493 TTCGGTGTGGGGAGTTTTGTTAGTGCTGCGTTGATTTCGATAATCGAGACTTACTCGAGC 1552
Query 1569 TCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAAC 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAAC 1612
Query 1629 TATTATTGGCTTTTGGCTTTCACAAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGC 1688
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1613 TATTATTGGCTTTTGGCTTTCACTAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGC 1672
Query 1689 AAGCATTTCAAGAGTAGAAGTGATGATGATGATCAATGTGATACAAATTGTTAA 1742
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1673 AAGCATTTCAAGAGTAGAAGTGATGCTGATGATCAATGTGATACAAATTGTTAA 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5