BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14960.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893401 jgi|Araly1|893401|Al_scaffold_0006_1397 1557 0.0
> Ahg893401 jgi|Araly1|893401|Al_scaffold_0006_1397
Length=1071
Score = 1557 bits (843), Expect = 0.0
Identities = 1000/1074 (93%), Gaps = 17/1074 (2%)
Strand=Plus/Plus
Query 32 CTCTCGCTCCCCAGGTTTACAGCCGCAAGGACAAATCTCTCGGCGTTCTTGTCGCCAATT 91
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CTCCCGCTCCCCAGGTTTACAGCCGCAAGGACAAATCTCTCGGCGTTCTTGTCGCCAATT 67
Query 92 TCTTGACACTGTATAATCGTCCCGATGTTGATCT-ATTTGGGCTCGATGATGCCGCCGCG 150
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 68 TCTTGGTACTGTATAATCGTCCCGATGTTGATCTGA-TTGGGCTCGATGATGCCGCCGCG 126
Query 151 AAATTAGGAGTTGAACGTCGGCGTATTTATGATGTGGTCAATATATTGGAGAGTATTGGG 210
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 127 AAATTAGGAGTGGAACGTCGCCGTATCTATGATGTGGTGAATATATTGGAGAGTATTGGG 186
Query 211 CTTGTTGCAAGAAGTGGGAAGAATCAGTATTCGTGGAAAGGTTTTGGAGCTGTTCCTCGT 270
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 CTTGTTGCAAGAAGTGGGAAGAATCAGTATTCGTGGAAAGGTTTTGGAGCAGTTCCTCGT 246
Query 271 GCTCTATCTGAACTCAAAGAAGAGGGAATGAAAGAGAAGTTTGCGATCGTCCCTTTTGTG 330
||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||
Sbjct 247 GCTCTATGTGAACTCAAAGAAGAAGGAATGAGAGAGAAGTTTGGGATCGTCCCTTATGTG 306
Query 331 GCCAAGTCAGAGATGGTCGTTTATGAGAAAGAAGGAGAAGAATCTTTCATGTTATCTCCT 390
||||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||
Sbjct 307 ACCAAGTCAGAGATGGTCATTTTTGAGAAAGAAAGAGAAGAAGCTTTCATGTTAACTCCT 366
Query 391 GATGATCAAGAGTTCTCACCATCTCCCAGACCTGACAACAGGAAGGAGAGAACTCTCTGG 450
|||||||||||||| ||||||||||||| || |||||||| ||||||||||||||| |||
Sbjct 367 GATGATCAAGAGTTTTCACCATCTCCCAAACTTGACAACAAGAAGGAGAGAACTCTTTGG 426
Query 451 CTACTTGCACAGAACTTTGTGAAGCTGTTTTTATGCTCTGATGATGATCTGGTAACATTT 510
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 427 CTACTTGCACAGAACTTTGTGAAGCTGTTTTTATGCTCTGATGATGATCTGATAACATTT 486
Query 511 GATAGCGCTACAAAAGCATTGCTGAATGAGTCTCAGGATATGAATATGAGAAAGAAAGTT 570
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 487 GATAGCGCTACAAAAGCATTGCTGATTGAGTCTCAGGATATGAATATGAGAACTAAAGTT 546
Query 571 AGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGACTCAT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGACTCAT 606
Query 631 GTCCCAGAGACTAAGAAGCCGGCATATAGGTGGTTGGGATCTAAAACCATATTTGAAAAC 690
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 607 GTCCCAGAGACTAAGAAGCCGGCATATAGGTGGTTGGGGTCCAAAACCATTTTTGAAAAC 666
Query 691 AGATTCATTGA-TGGTTCTGCAAGCT--T-ATGTGATCGTAATGTGCCTAAAAAGCGGGC 746
|||||| || | |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 667 AGATTCCTT-ACTGGTTCTGCAAGCTCATTATGTGATCGTAATGTGCCTAAAAAGCGGGC 725
Query 747 ATTTGGGACCGAACTCACAAACGTTAACGCAAAGAGAAACAAATCAGGTTGTTCTAAAGA 806
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 726 GTTTGGGACCGAACTCACAAACGTTAACGCAAAGAGAAACAAACCAGGTTGTTCT---GA 782
Query 807 AGACAGCAAGCGTAATGGAAATCAAAACACAAGCATTGTTATCAAGCAAGAACAATGTGA 866
||||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 783 AGACAGCAAGCGTTATGGAAAACAAAACACAAACATTGTTATCAAGCAAGAACTATGTGA 842
Query 867 TGATGTGAAACCGGACGTGAAGAATTTTGCCTCTGGATCATCCACTCCTGCAGGCACTTC 926
|| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 843 TG-TG--AAACCGGACGTGAAGAACTTTGCCTCTGGACCATCCACTCCTGCAGGCACTTG 899
Query 927 TGAGA-GTAACGATATGGGAAACAACATTAGGCCAAGAGGTAGACTTGGAGTTATCGAAG 985
||||| | ||| || | |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 900 TGAGATG-AACAATGTAGGAAACAACATTAGGCCAAGAGGTCGACTTGGAGACATCGAAG 958
Query 986 CCCTTTCTACTCTTTACCAACCATCA-TATTGCAATCCTGAGTTACTTGGTCTTTTTGCG 1044
||||||||||||| ||||||||| || ||||||||||||| |||| || | ||||||| |
Sbjct 959 CCCTTTCTACTCTATACCAACCA-CAGTATTGCAATCCTGCGTTAATTAGACTTTTTGAG 1017
Query 1045 CATTACAACGAGACATTTAGGTCATATCAAGAAGAGTTTGGTCGGGAGAAATGA 1098
|||||| || ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1018 CATTACCACCAGACATTTAGGTCATGTCAAGAAGAGTTTGGTCGGAAGAAATGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5