BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14980.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940980 jgi|Araly1|940980|scaffold_601524.1 1450 0.0
> Ahg940980 jgi|Araly1|940980|scaffold_601524.1
Length=1016
Score = 1450 bits (785), Expect = 0.0
Identities = 906/964 (94%), Gaps = 9/964 (1%)
Strand=Plus/Plus
Query 1 ATGGGACTCCATCCAGTCTCAGAGGCCAACGCCTCAAGCCCCTTTGGTTCCCTCTCTGCG 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 22 ATGGGACTCCATCCAGTCTCAGAGGCCAACGCCTCAAGCCCCTTCGGTTCTCTCTCTGCC 81
Query 61 GCTGA-ATTCTACTCCCGCCACTCCGTCACCCACTCCTCCG-CTTACGTCACCAACCCCA 118
|| | ||| |||||||||||||||||| |||| ||||||| ||| ||||||||||| |
Sbjct 82 GC-CACATTTTACTCCCGCCACTCCGTCGCCCATTCCTCCGCCTT-TGTCACCAACCCAA 139
Query 119 CCGGTCTCAAACTCTTTACCCAATGGTGGACTCCACTCAACCGTCCACCACTCGGCCTCA 178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CCGGCCTCAAACTCTTTACCCAATGGTGGACTCCACTCAACCGTCCACCACTCGGCCTCA 199
Query 179 TTGCTGTTGTCCACGGCTTCACCGGCGAATCCAGCTGGTTCCTCCAACTAACATCAGTCC 238
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 200 TTGCTGTTGTTCACGGCTTCACCGGCGAATCCAGCTGGTTCCTTCAACTAACATCCGTCC 259
Query 239 TCTTCGCAAAATCCGGATACCTCACTTGCGCCATCGACCACCAAGGCCACGGCTTCTCAG 298
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 260 TCTTCGCCAAATCCGGATACCTAACTTGCGCCATCGACCACCAAGGCCACGGCTTCTCAG 319
Query 299 ACGGTTTGACCGCTCACATCCCAAACATCAACCTCATTGTTGACGACTGCATTTCCTTCT 358
||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 320 ACGGTTTAACCGCTCACATCCCAAACATCAACCTAATTGTCGACGACTGCATCTCCTT-T 378
Query 359 TT-GACGACTTCCGTAAACGTCACGCTTCCTCCT--T-TCTCCCGGCCTTCCTCTACTCT 414
|| |||||||||||||| ||||||||||||| || | |||||| |||||||||||||
Sbjct 379 TTCGACGACTTCCGTAAGCGTCACGCTTCCTTCTCATCTCTCCCTTCCTTCCTCTACTCC 438
Query 415 GAATCCCTTGGTGGCGCAATCGCTCTGTACATTACTCTCCGCCAGAAACACCAATGGAAC 474
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 439 GAATCCCTTGGTGGCGCAATCGCTCTCTACATTACCCTCCGCCAGAAACACCAGTGGAAC 498
Query 475 GGTCTTATCCTCAGCGGTGCAATGTGCTCCATCAGTCACAAATTTAAACCTCCATGGCCG 534
||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 499 GGTCTTATCCTCAGCGGCGCAATGTGCTCGATCAGCCACAAATTCAAACCTCCCTGGCCG 558
Query 535 TTACAACACCTCTTAACCCTAGCTGCTACTCTCATCCCCACCTGGCGCGTCGTCCCAACT 594
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 559 TTACAACACCTCTTAACCCTAGCAGCTACTCTCATCCCCACCTGGCGCGTCGTCCCCACT 618
Query 595 CGCGGCTCCATCGCCGGCGTCTCTTTCAAGGAGCCATGGAAACGGAAACTCGCCTATGCT 654
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 619 CGCGGCTCCATCGCCGGCGTCTCTTTCAAGGAACCATGGAAACGGAAACTAGCCTATGCT 678
Query 655 AACCCAAACAGAACCGTCGGTAAACCACGAGCAGCCACGGCCTATGAGCTCGTACGAGTC 714
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 679 AACCCAAACAGAACCGTCGGTAAACCACGAGCAGCCACGGCCTACGAGCTCGTACGAGTC 738
Query 715 TGCGAGGATCTTCAAAACAGGTTTGAAGAAGTTGAAGTCCCGTTGATGATTGTGCACGGT 774
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 739 TGCGAGGATCTTCAAAGTAGGTTTGAAGAAGTTGAAGTCCCCTTGATGATTGTGCACGGT 798
Query 775 AGAGACGACGTCGTCTGCGATCCAGCCTCCGTCGAAGAGCTTTACCGGAGATGCAGTAGC 834
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 799 GGAGACGACGTCGTCTGCGATCCGGCCTCCGTCGAGGAGCTTTACCGGAGATGCAGTAGC 858
Query 835 AGAGACAAGACGATAAAGATTTATCCAGGGATGTGGCATCAGCTGATTGGAGAGTCAGAG 894
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 859 AGAGACAAGACAATAAAGATTTATCCAGGGATGTGGCATCAGCTAATAGGAGAGTCGGAG 918
Query 895 GAGAACGTCGACTTGGTGTTCGGTGATGTTTTGGATTGGATTAAGACACGATCTGAAATC 954
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 919 GAGAACGTCGACTTGGTGTTCGGTGATGTTTTGGATTGGATTATGAAACGATCTGAAATC 978
Query 955 TCCA 958
||||
Sbjct 979 TCCA 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5