BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14990.1
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893404 jgi|Araly1|893404|Al_scaffold_0006_1400 2246 0.0
> Ahg893404 jgi|Araly1|893404|Al_scaffold_0006_1400
Length=1890
Score = 2246 bits (1216), Expect = 0.0
Identities = 1351/1416 (95%), Gaps = 9/1416 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGATATAATGAAGGAAGTAGAAGGGAAAGTGAAGTTTTCAATGGCGGATTCGACA 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGATATAATGAAGGAAGTGGAAGGGAAAGTGAAGTTTTCAATGGCGGATTCGACT 60
Query 61 ATGATGTTACTTGTTCAACAAGCAATGGACAAAGCCCATGAAAAGATCAAAACCAAACAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGATGTTACTTGTTCAACAAGCAATGGACAAAGCCCATGAAAAGATCAAAACCAAACAC 120
Query 121 GGTCTTCTCCTCCGTCTCAATGCCATATCCATTTTCTACGAGCTCGCTGTGATACAGCTA 180
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 121 GGTCTTCTCCTCCGTCTCAATGCCATATCTATTTTCTACGAGCTAGCTGTGATACAGCTC 180
Query 181 GAGAGCTGTCTTAGTTTTGTCGGACAAGAGACTGATAAACTAGAGAGTAACCACGAGGAA 240
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 181 GAGAGCTGTCTTAGTTTTGTCCGACAAGAAACCGATAAACTAGAGAGTAACCACGAGGAA 240
Query 241 GTGGTTCGAGATCTGAGAGAGATTAAAGACAGGCTTCACCACCGTCTCTTAGAGACTGAA 300
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 GTGGTTCGGGATCTGAGAGAGATTAAAGACAGACTTCACCACCGTCTCTTAGAGACCGAA 300
Query 301 ATAGCGATTCTTGAGAAAGATAGACAGTTGTTAGAGATGTCTGAGAACCAAGAGTCTCTG 360
|||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 301 TTAGCCATTCTTGAGAAAGACAGACAGTTGTTAGAGATGTCTGAGAGCCAAGAGTCTCTG 360
Query 361 AGAAACGTGTTGGAGAGTAAAGAAACAGAGTTGGTTCATTTGCAAGATCTTGAGAGGAAG 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AGAAACGTGTTGGAGAGTAAAGAAACAGAGTTGGTTCATTTACAAGATCTTGAGAGGAAG 420
Query 421 AGATTTCATAGTAAGATTGGGGATTTTATCAAGGAAGATGAGTTTTCTGAGCTGAAGAGC 480
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 AGATTTCATAGTAAGATTGGGGATTTTATTAAGGAAGATGAGTTTTCGGAGCTGAAGAGC 480
Query 481 TCTGTTGATCAACAAGTGATGAATCTTAGACAAAAGCTTGAGACAGAGTACGATGAATTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTGTTGATCAACAAGTGATGAATCTTAGACAAAAGCTTGAGACAGAGTACGATGAATTG 540
Query 541 AGAGGAGAAACAGAGGATCCTTCAGCGGTTGATATTGATGTTTTGAAAGGGACAATGGAT 600
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 GGAGGAGAAACAGAGGATCCTTCAGGGGTTGATATTGATGTTTTGAAAGGGACAATGGAT 600
Query 601 CTTGCTTTCAACAAGATGCATCACGCGATATTCTTGTCGGAATTGGGTCCTATTGAGCAG 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CTTGCTTTCAACAAGATGCATCACGCGATATTCTTGTCGGAGTTGGGTCCTATTGAGCAG 660
Query 661 AGTTGGAGATGGTCTATAGAGAGAGATTCAATGGCGTTACTGATAAAAGGTTTCATGAAT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 AGTTGGAGATGGTCAATAGAGAGAGATTCAATGGCGTTACTGATAAAAGGTTTTATGAAT 720
Query 721 GGTTTAGAGGAGAAGATGGAGAAAGTAATGATAGTTGTAAAAGATTATGAATCGGGTTTT 780
||||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||
Sbjct 721 GGTTTAGAGGAGAAGATGGAGAAGGTAATGATGGTTGTAAGAGATTATGAGTCGGGTTTT 780
Query 781 AAAGATCGGGTTGGTTCGATTCGTAGAGAGTTAGAGTGTTTAGAATCTCAGTCTGATCAG 840
|||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 781 AAAGATCGGGTTTGTTCGATTCGTAGAGAGGTAGAGTGTTTAGAATCTCAGTTTGATCAG 840
Query 841 ATCATCGTCCATAGGTCATCATCTCCTAGATCATGTGTAGCAACAGCAGCAACAATATCA 900
|||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 ATCATCATCCATAGATCTTCATCTCCTAAATCATGTGTAGCAACAGCAGCAACAATATCA 900
Query 901 TCATCATCTTCAATAGATAATGAAATTGGTGATGATAAAGAAGCAAAAGAAGATAGAGAA 960
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 TCATCATCTTCAATAGATTATGAAATTGGTGATGATAAAGAAGCAAAAGAAGATGGAGAA 960
Query 961 GAAGAACAAGATTCAAGCAATTTTCCTGTTTCGAAGTTGATAAAGAGTCATGAATCAATC 1020
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAAGAACAAGATTCGAGCAATTTTCCTGTTTCGAAGTTGATAAAGAGTCATGAATCAATC 1020
Query 1021 ATTAGGAGGAAAAGCGAAGAGCTTGCTCCTCCTAAGATCGAGTCTATTAAACGACAGAAG 1080
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTAGGAGGAAAAGTGAAGAGCTTGCTCCTCCTAAGATCGAGTCTATTAAACGACAGAAG 1080
Query 1081 AGTTGCAACGGCTCTAGCTCGAAGCGAGCTATTGATGATATCGTTTCAGGTCTTGATAGC 1140
||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1081 AGTTGCAACAGCTCTAGCTCGAAACGAGCTATTGATGATATTGTTGCAGGTCTTGATAGC 1140
Query 1141 TTGATGAGTCTTAACACTAAGTTATTTGAACATTTGTTTGATGATGATGATGGTGATAGA 1200
|| ||| |||||||||||||| |||| ||||| ||||| |||||||||||| ||||||||
Sbjct 1141 TTAATGGGTCTTAACACTAAGCTATTCGAACAATTGTTCGATGATGATGATCGTGATAGA 1200
Query 1201 CATGAGCATCATCCTGAAGTGGTAATGGATGACAATTTAGATGATGTTTGGATGAAAATG 1260
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 CATGAGCATGATCTTGAAGTGGTAATGGATGACAATTTGGATGATGTTTGGATGAAAATG 1260
Query 1261 CAGAAGAATAACTCGGTGTTTTCAGACAATGCGATAGAGGAGAAAGAAGATACAGAGATT 1320
||||||||||||||||||||||||||||||||||||||||| | ||| ||| | | |||
Sbjct 1261 CAGAAGAATAACTCGGTGTTTTCAGACAATGCGATAGAGGATACAGA-GATG-A-A-ATT 1316
Query 1321 AGATTAATGATATTGGAAGATACTTACTTGACTTTGCTCAAAGGTCTAAAAGCAGATGAG 1380
| || ||| || | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 A-AT-AAT-AT-T-GGAGGATACTTACTTGACTTTGCTCAAAGGTCTAAAAGCAGATGAG 1371
Query 1381 ATCACAAACAATagaaaagcggaagaagaagaagaa 1416
||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATCACAAACAATAGAAAAGCGGAAGAAGAAGAAGAA 1407
Score = 710 bits (384), Expect = 0.0
Identities = 460/497 (93%), Gaps = 4/497 (1%)
Strand=Plus/Plus
Query 1507 GAAGATGAAGAATTCAGACAAGAACTAAGTTGGATTATTGTAACAGAGTTGCTAAGAGAA 1566
||||| |||||||||| ||||||| ||| |||||||||||| || |||||| ||||||||
Sbjct 1396 GAAGAAGAAGAATTCAAACAAGAAGTAAATTGGATTATTGTTACTGAGTTGTTAAGAGAA 1455
Query 1567 GTTTCAGAGACTGTGGAGAATCATGAAAAGATTGAAGCAAATAATAAAAGAGTGATTGAG 1626
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1456 GTTTCAGAGACTGTGGAGAATCATGAAAAGATTGAAGCAAATAATAAACGAGTGATTGAG 1515
Query 1627 GAAGAAGTAAACAGAGCCTGCTTGGA-GATTTCTTTACTCTACGATGATTTTGATTTCAA 1685
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 1516 GAAGAAGTAAACAGAGCCTGCTTGGAAG-TTTCTTTACTCTACGATGAGTTTGATTTCAA 1574
Query 1686 GATTCAAGAGAAGTTAAAGATGGTAACTTTCAGGTTACAAAACTTGGAGATTAAGATTGA 1745
||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 1575 GATTCAAGAGAAGTTGAAGATGGTAACTTTGAGGTTACAAAACATGGAGATAAAGATTGA 1634
Query 1746 TTCAACGATGGATTTTATAGCAGAGTTAAGGC-AAAGAGAATCAGTTTATAGAACAGCTT 1804
|||||||||||||| ||| ||||||||||||| ||| |||||| || ||||||| |||||
Sbjct 1635 TTCAACGATGGATTCTATCGCAGAGTTAAGGCGAAA-AGAATCCGTATATAGAAGAGCTT 1693
Query 1805 TTGTTCTTAGGTCTGAGAATCTCAGGAAGGCAGAAACTGAGGTTGATCTTCTTGGAGATC 1864
|||||||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1694 TTGTTCTTGGGTCTGATAATCTAAGAAAGGCAGAAACTGAGGTTGATCTTCTTGGAGATC 1753
Query 1865 AAGTTGATTCGCTTGTGAAGCTTTTACAAAAAACACTTTGGACATTTCATCAACATCCAT 1924
||||||||| ||||||||||||| | || |||| |||||||||||| |||| ||||||||
Sbjct 1754 AAGTTGATTTGCTTGTGAAGCTTCTCCAGAAAATACTTTGGACATTGCATCGACATCCAT 1813
Query 1925 TGCTTCTCTGCAATAACTCAGATATATTGGAGATCTCGAAGATGATCAAGAAAGAGTTAT 1984
|||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 1814 TGCTTCTCTGCAATAACTCAGACATATCGGAGATCTCAAAGATGATCAAGAAAGAGTTAT 1873
Query 1985 TATCTGAGGATTCATAA 2001
||||||||||||||||
Sbjct 1874 CATCTGAGGATTCATAA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75228233875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5