BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14995.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893405 jgi|Araly1|893405|Al_scaffold_0006_1401 366 4e-101
Ahg488344 jgi|Araly1|488344|fgenesh2_kg.6__1478__AT5G15000.1 340 3e-93
Ahg907989 jgi|Araly1|907989|Al_scaffold_0002_1070 324 3e-88
> Ahg893405 jgi|Araly1|893405|Al_scaffold_0006_1401
Length=300
Score = 366 bits (198), Expect = 4e-101
Identities = 258/287 (90%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 20 TCAAAGTGATGTTCTTGTTTTTATGTGTGATCATGGCGTTGCTCTGTCATCATCAATCCG 79
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 17 TCAAAGTGATGTTCTTCTTTTTATCAGTGATCATGGCGTTGCTCTGTCATCATCAATCCG 76
Query 80 AAGTTCAAGCGGCGCAGAAACCAAGTCCTGTTGCTTGCTGGTCGTCAATAAACAAGGTTC 139
||| |||||| ||| |||||||||||| | || ||||| ||||||||||| |||||||
Sbjct 77 AAGCTCAAGC-GCG--GAAACCAAGTCCCGATGATTGCTTCTCGTCAATAAAGAAGGTTC 133
Query 140 AAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGATTATAAAGGTTTGAGCAAGG 199
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 134 AAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGATTTTAAAGGTTTGGGTAAGG 193
Query 200 ATTGTTGCCTCGCCATCTATGGCCTCATCGACGATTGTTTTCCGATTGTTTTCAGCGGAA 259
||||||||| ||||||| |||||||| |||||||||||||||| || ||||| |||||
Sbjct 194 ATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTTTCCCATCATTTTCCCCGGAA 253
Query 260 AACCAGACATTGCAGTACTCGTTAAGGATGCATGTGCTGTTAATTAA 306
||||| |||||| || || ||||||||||||||||| ||||||||||
Sbjct 254 AACCATACATTGTAGCACCCGTTAAGGATGCATGTGTTGTTAATTAA 300
> Ahg488344 jgi|Araly1|488344|fgenesh2_kg.6__1478__AT5G15000.1
Length=295
Score = 340 bits (184), Expect = 3e-93
Identities = 262/299 (88%), Gaps = 7/299 (2%)
Strand=Plus/Plus
Query 1 ATGGGAATAAAACAGATCGTCAAAGTGATGTTCTTGTTTTTATGTGTGATCATGGCGTTG 60
||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCATTTTATCAGTGATCATGGCGTTG 60
Query 61 CTCTGTCATCATCAATCCGAAGTTCAAGCGGCGCAGAAACCAAGTCCTGTTGCTTGCTGG 120
|| ||||||||||||||||||| |||||| || | || ||||| ||| | || |||||
Sbjct 61 CTTTGTCATCATCAATCCGAAGCTCAAGC-GC-C-GATACCAAATCCCGGTGATTGCTTC 117
Query 121 TCGTCAATAAACAAGGTTCAAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGAT 180
||||||||||| || ||| |||||||||| |||||| |||||||||||||||||||| ||
Sbjct 118 TCGTCAATAAAGAATGTTAAAGGTTGTGTCGATGCTCTGAAAGCTGCCACTAAAGGACAT 177
Query 181 -TATAAAGGTTTGAGCAAGGATTGTTGCCTCGCCATCTATGGCCTCATCGACGATTGTTT 239
| |||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 178 CT-TAAAGGTTTGGGCAAGGATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTT 236
Query 240 TCCGATTGTTTTCAGCGGAAAACCA-GACATTGCAGTACTCGTTAAGGATGCATGTGCT 297
|||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 237 TCCGATCCTTTTCCCCGGAAAA-CACTACATTGCAGTACTCGTTAAGGATGCATGTGCT 294
> Ahg907989 jgi|Araly1|907989|Al_scaffold_0002_1070
Length=303
Score = 324 bits (175), Expect = 3e-88
Identities = 268/311 (86%), Gaps = 13/311 (4%)
Strand=Plus/Plus
Query 1 ATGGGAATAAAACAGATCGTCAA-AGTGATGTTCTTGTTTTTATGTGTGATCATGGCGTT 59
||||||| ||||||||| || || |||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGGGAACAAAACAGATTGT-AACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTT 59
Query 60 GCTCTGTCATCATCAATCCGAAGTTCAAGCGGCGCAGAAACCAAGTCCTGTTGCTTGCTG 119
||| ||||||||||||||||||| |||||| || | || ||||| ||||| || |||||
Sbjct 60 GCTTTGTCATCATCAATCCGAAGCTCAAGC-GC-C-GATACCAAATCCTGGTGATTGCTT 116
Query 120 GTCGTCAATAAACAAGGTTC-AAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAG 178
||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 117 CTCGTCAATAAAGAAGG-TCAAAGGTTGTGTCGATGCTGTGAAAGCTGCCACTAAAGGAG 175
Query 179 ATTAT-AAAGGTTTG-AGCAAGGATTGTTGCCTCGCCATCTATGGCCTCATCGACGATTG 236
||| | ||||||||| | |||||||||||||| ||||||| |||||||| || || | ||
Sbjct 176 ATT-TCAAAGGTTTGGA-CAAGGATTGTTGCCACGCCATCAATGGCCTCGTCCACCACTG 233
Query 237 TTTTCCGATTGTTTTCAGC-GGAAAACCAGACATTGCAGTACTCGTTAAGGATGCATGTG 295
||||| ||| ||||| | ||||||||| |||||||| ||| ||||||||||||||||
Sbjct 234 TTTTCTGATCCTTTTCC-CAGGAAAACCATACATTGCACTACGCGTTAAGGATGCATGTT 292
Query 296 CTGTTAATTAA 306
| ||||||||
Sbjct 293 ATATTAATTAA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5