BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15000.1
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488344 jgi|Araly1|488344|fgenesh2_kg.6__1478__AT5G15000.1 412 5e-115
Ahg907989 jgi|Araly1|907989|Al_scaffold_0002_1070 368 1e-101
Ahg893405 jgi|Araly1|893405|Al_scaffold_0006_1401 348 1e-95
> Ahg488344 jgi|Araly1|488344|fgenesh2_kg.6__1478__AT5G15000.1
Length=295
Score = 412 bits (223), Expect = 5e-115
Identities = 273/297 (92%), Gaps = 4/297 (1%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTG 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCATTTTATCAGTGATCATGGCGTTG 60
Query 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATTCCAACTCCCGGTGATTGCTTCTCG 120
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATACCAAATCCCGGTGATTGCTTCTCG 120
Query 121 TCAATCAAGAAGGTTAAAGGTTGTG-CGGATGCTGTGAAAGCTGCCACTAAAGGACATCT 179
||||| ||||| ||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 121 TCAATAAAGAATGTTAAAGGTTGTGTCG-ATGCTCTGAAAGCTGCCACTAAAGGACATCT 179
Query 180 TCTACGTTTGGTCAAGGATTGTTGCCACGTCATCAATGACCTTGCCGACGATTGTTTTCC 239
| | |||||| ||||||||||||||||| |||||||| ||| | |||||||||||||||
Sbjct 180 TAAAGGTTTGGGCAAGGATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTTTCC 239
Query 240 GATCATTTTCCCCGGAAAAC-CTTACATTGCCGCACTCGTTAAGCATGCATGTTCTT 295
|||| ||||||||||||||| || ||||||| | |||||||||| |||||||| |||
Sbjct 240 GATCCTTTTCCCCGGAAAACACT-ACATTGCAGTACTCGTTAAGGATGCATGTGCTT 295
> Ahg907989 jgi|Araly1|907989|Al_scaffold_0002_1070
Length=303
Score = 368 bits (199), Expect = 1e-101
Identities = 265/296 (90%), Gaps = 8/296 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTG 60
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACAAAACAGATTGTAACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTG 60
Query 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATTCCAACTCCCGGTGATTGCTTCTCG 120
||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATACCAAATCCTGGTGATTGCTTCTCG 120
Query 121 TCAATCAAGAAGGTTAAAGGTTGTG-CGGATGCTGTGAAAGCTGCCACTAAAGGACATCT 179
||||| |||||||| |||||||||| || |||||||||||||||||||||||||| || |
Sbjct 121 TCAATAAAGAAGGTCAAAGGTTGTGTCG-ATGCTGTGAAAGCTGCCACTAAAGGAGAT-T 178
Query 180 TCTACG-TTTGGTCAAGGATTGTTGCCACGTCATCAATGACCTTG-CCGACGATTGTTTT 237
|| | | ||||| ||||||||||||||||| |||||||| ||| | || || | ||||||
Sbjct 179 TCAAAGGTTTGGACAAGGATTGTTGCCACGCCATCAATGGCCTCGTCC-ACCACTGTTTT 237
Query 238 CCGATCATTTTCCCCGGAAAACCTTACATTGC-CGCACTCGTTAAGCATGCATGTT 292
| |||| ||||||| |||||||| |||||||| | || ||||||| |||||||||
Sbjct 238 CTGATCCTTTTCCCAGGAAAACCATACATTGCACT-ACGCGTTAAGGATGCATGTT 292
> Ahg893405 jgi|Araly1|893405|Al_scaffold_0006_1401
Length=300
Score = 348 bits (188), Expect = 1e-95
Identities = 255/287 (89%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 6 AACAAAACAGATCGTCACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTGCTTTG 65
||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 6 AACGAAACAGA---TCAAAGTGATGTTCTTCTTTTTATCAGTGATCATGGCGTTGCTCTG 62
Query 66 TCATCATCAATCCGAAGCTCAAGCGCCGATTCCAACTCCCGGTGATTGCTTCTCGTCAAT 125
|||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||
Sbjct 63 TCATCATCAATCCGAAGCTCAAGCGCGGAAACCAAGTCCCGATGATTGCTTCTCGTCAAT 122
Query 126 CAAGAAGGTTAAAGGTTGTGCGGATGCTGTGAAAGCTGCCACTAAAGGACATCTTCTACG 185
||||||||| ||||||||| |||||||||||||||||||||||||||| || || | |
Sbjct 123 AAAGAAGGTTCAAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGATTTTAAAGG 182
Query 186 TTTGG-TCAAGGATTGTTGCCACGTCATCAATGACCTTGCCGACGATTGTTTTCCGATCA 244
||||| | |||||||||||||||| |||||||| ||| | ||||||||||||||| ||||
Sbjct 183 TTTGGGT-AAGGATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTTTCCCATCA 241
Query 245 TTTTCCCCGGAAAACCTTACATTGCCGCACTCGTTAAGCATGCATGT 291
|||||||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct 242 TTTTCCCCGGAAAACCATACATTGTAGCACCCGTTAAGGATGCATGT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10416475797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5