BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15030.2

Length=1029
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg350641 jgi|Araly1|350641|fgenesh1_pg.C_scaffold_6001234           213    2e-54


> Ahg350641 jgi|Araly1|350641|fgenesh1_pg.C_scaffold_6001234
Length=324

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 198/236 (84%), Gaps = 14/236 (6%)
 Strand=Plus/Plus

Query  180  AGGGATGACCATTAGTGATGCTCGGGCATACCTTCAGCAAGTGAAAAATACGTTTATTGA  239
            ||||| ||||| ||||||||||| ||||||| || ||||||||||| |||||    ||  
Sbjct  51   AGGGAAGACCACTAGTGATGCTCTGGCATACATTAAGCAAGTGAAAGATACG----TT--  104

Query  240  TCATGATGAAAGGGACAAA-TATGCTATGTTCCGTAAGGTTTTGTTCGATTTTAAGGC-A  297
            || |||| ||||||| ||| |||| ||||||||||| | || ||||  |||||||||| |
Sbjct  105  TCGTGATCAAAGGGA-AAATTATGATATGTTCCGTATGCTTATGTTTAATTTTAAGGCTA  163

Query  298  CAACGGATTGATCGTTCTA-TATTGTATGCACGATTGAAGAAGTTGTTTAAGAAGCACAA  356
             || |||||||||  |||| | |||||||| || ||||||||||| |||||| |||||||
Sbjct  164  -AAAGGATTGATCAATCTACT-TTGTATGCTCGTTTGAAGAAGTTATTTAAGGAGCACAA  221

Query  357  -ACATTTGATTATCGGCTTTAACACCTTTTTGTCACTTGGAGATAAGATATTTCTT  411
             | |||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  222  GA-ATTTAATTATCGGATTTAACACCTTTTTGTCACTTGGAGATAAGATAATTCTT  276



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38275408668


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5