BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15040.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893411 jgi|Araly1|893411|Al_scaffold_0006_1407 339 8e-93
> Ahg893411 jgi|Araly1|893411|Al_scaffold_0006_1407
Length=264
Score = 339 bits (183), Expect = 8e-93
Identities = 237/264 (90%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAATGTAGGGCATACTTTATGGAAGTGAAAGATACGTTTCATGATCAAATTGAA 60
|||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGCTGAATGTAGAGCATACTTTAAGGAAGTGAAAGATACGTTTCATGACCAAAGGGAA 60
Query 61 AAATATGATATGTTCAAGAATATTTTGTTAGATTTGAAGGCACGAAGGATTGGTCGTCAT 120
|||||||||||||||| | || ||| |||||||| ||||||||||||| ||| | ||
Sbjct 61 AAATATGATATGTTCATTAGGGTTATGTCAGATTTGAGGGCACGAAGGATTCGTCATTAT 120
Query 121 ACTGCGTTTGCTCAATTGAAAGAGTTGTTCAAGGAGCACAACGAATTGATTATCGGATTT 180
||||||||||||| |||||| |||||||| |||| |||||||||||| ||||||||||||
Sbjct 121 ACTGCGTTTGCTCGATTGAAGGAGTTGTTTAAGGGGCACAACGAATTAATTATCGGATTT 180
Query 181 AACACCTTTTTGCCAACTGGATACAAGATAGCTCTTGATGATGACGTAGAAGACTCTTTT 240
|||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 AACAACTTTTTGCCACCTGGATACAAGATAACTCTTGATGATGACGTAGAAGACTCTTTT 240
Query 241 AGCTCGACTGCAAGAAACTATTGA 264
| ||| || |||||||||||||||
Sbjct 241 ATCTCCACCGCAAGAAACTATTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5