BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15050.1
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488347 jgi|Araly1|488347|fgenesh2_kg.6__1481__AT5G15050.1 2230 0.0
Ahg492046 jgi|Araly1|492046|fgenesh2_kg.7__1479__AT4G27480.2 219 7e-56
> Ahg488347 jgi|Araly1|488347|fgenesh2_kg.6__1481__AT5G15050.1
Length=1555
Score = 2230 bits (1207), Expect = 0.0
Identities = 1395/1485 (94%), Gaps = 15/1485 (1%)
Strand=Plus/Plus
Query 1 AACAAACAAACAAAAACACACCAATTCCTTCATTCATCTTCTCCATTTCGTAATTCGTAC 60
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 AACAAACAAACAAAAACACACCAATT-CTTCATTCATCTTCTCCATATCGTAATTCGTAC 59
Query 61 ACTTCACTCTCAAGTCTCTCTAAGCCACAAACCACTGAAGAAGAATCCATCT-A-AGAG- 117
|||| | ||| |||||| ||| | | | | |||||||||||||||| | || |
Sbjct 60 ACTTGA--CTC---TCTCTC-AAGTCTC--TCTA--GAAGAAGAATCCATCTGAGAGTGA 109
Query 118 CTGTT-AAAAATTGATGAAGCTTCGAATATGAAGAAATTGAAAAGCTATTACATGCAAGT 176
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 110 TTCTTCTGTAATTGATGAAGCTTCGAATATGAAGAAATTGAAGAGCTATTACATGCAAGT 169
Query 177 TCGTAACCAGCAACAATCTCTTGACCGAAAATGGATTCTTCCATTAGCAATCGGATCCAT 236
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 170 TCGTCACCAGCAACAATCTCTAGACCGGAAATGGATTCTTCCATTAGCAATCGGATCCAT 229
Query 237 TTGTTCTCTCTTTCTCTTGTTGCTAACGAACTTAGCTTCTTCTTCTGGTCAAACTCGTTT 296
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 230 TTGTTCTCTGTTTCTCTTATTGCTAACGAACTTAGCTTCATCTTCTGGTCAAACTCGTTT 289
Query 297 GATTCCATTTTCAGTTTACGGATTTAGATCCTCCGTCTTCGTCGAATCCAAGATAAATCC 356
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 290 GATTCCGTTTTCAGTCTACGGATTTAGATCCTCCGTCTTCGTCGAATCCAAAATAAATCC 349
Query 357 AGTATCCGTCTCACTCACCGTCTCCGTCTCTCCTCCTCCGCCGCCACGTCTCGCTTATCT 416
||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 350 AGTATCCGTCTCAGTCTCCGTCTCCGTCTCTCCTCCGCCGCCGCCACGTCTCGCGTATCT 409
Query 417 AATCTCCGGCTCCTCTGGTGACGGTCAGATGCTGAAACGAACTCTAATGGCGCTTTATCA 476
||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 410 AATCTCCGGCTCCTCCGGTGACGGTCAGATGCTGAAACGGACTTTAATGGCGCTTTACCA 469
Query 477 TCCCAACAACCAGTACGTTGTTCATCTCGATCGGGAATCTTCACCGGAGGAACGATTGGA 536
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 470 TCCGAACAACCAGTACGTTGTTCATCTCGATCGGGAATCTTCACCAGAGGAACGATTGGA 529
Query 537 TCTCAGTGGTTTTGTGGCGAATCATACTCTGTTTCAGAGATTTCAAAATGTTCGGATGAT 596
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 530 TCTCAGTGGTTTTGTAGCGAATCAAACTCTGTTTCAGAGATTTCAAAATGTTCGGATGAT 589
Query 597 TGTTAAGGCTAATTTCGTTACGTATCGTGGTCCAACTATGGTGGCTAATACACTTCACGC 656
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 590 TGTTAAGGCTAATTTCGTTACTTATCGTGGTCCAACTATGGTGGCTAATACGCTTCACGC 649
Query 657 TGCAGCGATTTTGCTTCGTGAAGGTGGTGATTGGGATTGGTTCATCAATCTCAGTGCCTC 716
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 650 TGCAGCGATTTTGCTTCGTGAAGGTGGAGATTGGGATTGGTTCATCAATCTAAGTGCTTC 709
Query 717 TGATTATCCTCTCGTAACACAAGATGATCTGTTGCATACGTTTTCGTATCTTCCTCGAGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGATTATCCTCTCGTAACACAAGATGATCTGTTGCATACGTTTTCGTATCTTCCTCGAGA 769
Query 777 TCTCAATTTCATCGATCATACAAGCAACATTGGCTGGAAAGAGTCTCATAGAGCAAAGCC 836
||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||
Sbjct 770 TCTCAATTTCATCGATCATACGAGCAACATTGGTTGGAAAGAGTCTCATCGAGCGAAGCC 829
Query 837 TATAATTATTGATCCTGGTTTGTATATGTCAAAGAAAGCTGATGTTTTCTGGGTTTCACA 896
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 830 GATAATTATTGATCCTGGTTTGTATATGTCAAAGAAAGCAGATGTTTTCTGGGTTTCACA 889
Query 897 GAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTGGATGATGTTATC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTGGATGATGTTATC 949
Query 957 TAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCGAATTGTGTTAAT 1016
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 950 TAGACCTTTTGTGGATTATTTCATATGGGGATGGGACAATCTTCCTCGAATTGTTTTAAT 1009
Query 1017 GTATTACGCAAACTTCCTTTCATCGCCAGAAGGTTACTTCCACACTGTGATTTGCAATGC 1076
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1010 GTATTACGCAAACTTCCTTTCATCACCAGAAGGTTACTTCCACACGGTGATTTGCAATGC 1069
Query 1077 TCGAGAGTTTACCAACACAACGGTTAACAGTGACTTACATTTCATCTCATGGGACAATCC 1136
||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1070 TCGGGAGTTTACTAACACAACAGTAAACAGTGACTTACATTTCATCTCATGGGACAATCC 1129
Query 1137 TCCAAAGCAACATCCTCACCATCTTACATTAGATGATTTCCAGAGAATGGTGGACAGTAA 1196
||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1130 ACCAAAGCAACACCCTCACCATCTCACAGTAGATGATTTTCAGAGAATGGTGGACAGTAA 1189
Query 1197 CGCTCCTTTTGCTAGGAAATTCCGTAGAGATGAGCCTGTTCTCGATAAGATTGATTCGGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 CGCTCCTTTTGCTAGGAAATTCCGTAGAGATGAGCCTGTTCTCGATAAGATTGATTCAGA 1249
Query 1257 ACTATTGTTTCGGAGTCACGGGATGGTCACTCCGGGTGGTTGGTGTATTGGTACGAGGGA 1316
|| |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1250 GCTCTTGTCACGGAGTCACGGGGTGGTCACTCCGGGGGGTTGGTGTATTGGTACGAGGGA 1309
Query 1317 AAACGGGAGCGATCCGTGTGCGGTGATTGGTGATACGTCGGTTATTAAACCTGGTCTTGG 1376
|||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1310 AAACGGGAGCGATCCGTGTGCGATGATTGGTGATACCTCTGTTATTAAACCTGGTCTTGG 1369
Query 1377 AGCTAAACGGATCGAGAAACTCATAACTTATTTGTTATCTACTGAGAATTTCAGACCACG 1436
|||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1370 AGCTAAACGGGTCGAGAAACTCATAACCTATTTGTTATCAACTGAGAATTTCAGACCACG 1429
Query 1437 GCAATGCCGGTAATGGCAAATTAGAGTTTTGTCATAGAGATGGTT 1481
||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 1430 GCAATGCAGGTAATGGTAAATTAGAGTTATGTCAGAGAGATGGTT 1474
> Ahg492046 jgi|Araly1|492046|fgenesh2_kg.7__1479__AT4G27480.2
Length=1540
Score = 219 bits (118), Expect = 7e-56
Identities = 431/576 (75%), Gaps = 46/576 (8%)
Strand=Plus/Plus
Query 601 AAGGCTAATTTCGTTACGTATCGTGGTCCAACTATGGTGGCTAATACACTTCACGC-TGC 659
|||||||| ||||||||||||| || || |||||||||||||| || || ||||| |||
Sbjct 707 AAGGCTAACCTCGTTACGTATCGAGGACCCACTATGGTGGCTAACACGCTCCACGCTTGC 766
Query 660 AGCGATTTTGCTTCG-TGAAG-GTGGTGATTGGGATTGGTTCATCAATCTCAGTGCCTCT 717
|| ||| | ||| | | || || || |||||||||||||||||||||||||||||
Sbjct 767 -GCTATTCT-CTT-GAAGCAGAGTAAAGAATGGGATTGGTTCATCAATCTCAGTGCCTCG 823
Query 718 GATTATCCTCTCGTAACACAAGATGATCTG-TTGCATACGTTTTCGT-ATCTTC-CTCGA 774
||||||||||| || || ||||||||||| ||| |||| || ||| || | | ||
Sbjct 824 GATTATCCTCTAGTCACTCAAGATGATCTCATTG-ATACATTCTCGGGAT-TGGAC-CG- 879
Query 775 GATC-TCAA-TTTCATCGATCATACAAGCAACATT-GGCTGGAAAGA-GTCTCATA-GAG 829
|| | |||| ||| ||||| || | ||||| | | ||||||||||| | | | | |||
Sbjct 880 GAACCTCAACTTT-ATCGACCACAGTAGCAA-ACTAGGCTGGAAAGAAGA-TAA-ACGAG 935
Query 830 CAAAGCCTATAATTATTGATCCTGGT-TTGTA-TATGTCAAAGAAAG-CTGATGTTTTCT 886
|||||||| | || || || || || || || | |||| |||| | ||||| ||||
Sbjct 936 CAAAGCCTCTGATCATAGACCCGGGGCTT-TACTCCA-CAAA-AAAGTCAGATGTCTTCT 992
Query 887 GGGTTTCACA--GAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTG 944
||||| ||| ||||| | ||||| || || |||||||| || || || || || ||
Sbjct 993 GGGTTACACCTCGAAGA-ACC-ATGCCAACTGCATTCAAACTATTTACCGGTTCCGCTTG 1050
Query 945 GATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCG 1004
|||| | |||||| | | || || || |||| ||| ||||||||||| |||||||| ||
Sbjct 1051 GATGGTCTTATCTCGGTCGTTCGTAGAATATTGCATTTGGGGATGGGACAATCTTCCACG 1110
Query 1005 AATTGTGT-TAATGTATTACGCAAACTTCCTTTC-ATCGCCAGAAGGTTACTTCCACACT 1062
|| | | | ||||||||||| | || ||||| || | | || ||||| || ||||| |||
Sbjct 1111 AACTCT-TCTAATGTATTACACCAATTTCCTCTCTA-CACCGGAAGGATATTTCCATACT 1168
Query 1063 GTGATTTGCAATGCTCGAGAGTTTAC-CAACACAACG-GTT-AAC-AGTGACTTACATTT 1118
|| || ||||| |||| ||||| || | | || || | | ||| | ||| | |||||
Sbjct 1169 GTCATCTGCAACGCTCCAGAGT--ACTCTTC-CACCGTGCTGAACCAC-GACCTGCATTT 1224
Query 1119 CATCTCATGGGACAATCCTCC-AAAGCAACATCCTC 1153
|||||| |||||| ||||| ||| || |||||||
Sbjct 1225 CATCTCCTGGGACCGCCCTCCTAAA-CAGCATCCTC 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61096752980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5